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5FQ5

Crystal structure of Cas9-sgRNA-DNA complex solved by native SAD phasing

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004520molecular_functionDNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0043571biological_processmaintenance of CRISPR repeat elements
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 2083
ChainResidue
AA65
AU66
AHOH3252
AHOH3278
AHOH3279
BTHR1102

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 2084
ChainResidue
AHOH3158
AHOH3299
AG21
AHOH3006
AHOH3156

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2365
ChainResidue
AA68
AHOH3280
AHOH3283
BGLN1350
BHOH3588

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 2366
ChainResidue
BGLU584
BARG586
BASN588
BHOH3356
BHOH3357
EHOH3039

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1083
ChainResidue
AHOH3102
AHOH3104
AHOH3112
AHOH3299
AHOH3300
AHOH3301

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1084
ChainResidue
AU50
AHOH3183
AHOH3184
AHOH3185
AHOH3187
AHOH3209

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2367
ChainResidue
BLEU623
BTHR624
BPHE626
BTYR656
BHOH3386

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2368
ChainResidue
AHOH3107
BGLY361
BTYR362
BGLY365
BALA367

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 2369
ChainResidue
BILE226
BLEU229
BGLU232
BHOH3021
BHOH3022
BHOH3174

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2370
ChainResidue
BGLU108
BLYS111
BHOH3108
BHOH3109
BHOH3111

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 2371
ChainResidue
BASP576
BSER577
BALA640
BPHE643
BHOH3396
BHOH3399
BHOH3401

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1085
ChainResidue
AU12
AG13
AHOH3055
AHOH3060
AHOH3061

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE K B 2372
ChainResidue
AHOH3254
AHOH3255
AHOH3263
BGLU57
BHOH3003
BHOH3053
BHOH3593

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K B 2373
ChainResidue
AU22
AHOH3109
AHOH3114
BASP364
BGLY365

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K D 1013
ChainResidue
DDT5
DHOH3002
DHOH3003

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA10

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA840

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24505130
ChainResidueDetails
BALA10
BGLU762
BGLU766
BHIS983
BHIS1297
BASP1328

219140

PDB entries from 2024-05-01

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