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5F98

Crystal structure of RIG-I in complex with Cap-0 RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0005524molecular_functionATP binding
C0003676molecular_functionnucleic acid binding
C0005524molecular_functionATP binding
E0003676molecular_functionnucleic acid binding
E0005524molecular_functionATP binding
G0003676molecular_functionnucleic acid binding
G0005524molecular_functionATP binding
I0003676molecular_functionnucleic acid binding
I0005524molecular_functionATP binding
K0003676molecular_functionnucleic acid binding
K0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1001
ChainResidue
ACYS810
ACYS813
ACYS864
ACYS869

site_idAC2
Number of Residues3
Detailsbinding site for residue MG A 1002
ChainResidue
AHIS830
ASER854
BG2

site_idAC3
Number of Residues8
Detailsbinding site for residue M7G B 101
ChainResidue
ALYS858
ALYS861
AASP872
AILE875
ALYS888
BG2
AHIS847
ALYS851

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN C 1001
ChainResidue
CCYS810
CCYS813
CCYS864
CCYS869

site_idAC5
Number of Residues1
Detailsbinding site for residue MG C 1002
ChainResidue
CHIS830

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN E 1001
ChainResidue
ECYS810
ECYS813
ECYS864
ECYS869

site_idAC7
Number of Residues1
Detailsbinding site for residue MG E 1002
ChainResidue
EHIS830

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN G 1001
ChainResidue
GCYS810
GCYS813
GCYS864
GCYS869

site_idAC9
Number of Residues2
Detailsbinding site for residue MG G 1002
ChainResidue
GHIS830
GSER854

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN I 1001
ChainResidue
ICYS810
ICYS813
ICYS864
ICYS869

site_idAD2
Number of Residues2
Detailsbinding site for residue MG I 1002
ChainResidue
IGLU827
IHIS830

site_idAD3
Number of Residues4
Detailsbinding site for residue ZN K 1001
ChainResidue
KCYS810
KCYS813
KCYS864
KCYS869

site_idAD4
Number of Residues2
Detailsbinding site for residue MG K 1002
ChainResidue
KCYS829
KHIS830

site_idAD5
Number of Residues11
Detailsbinding site for Di-nucleotide M7G D 101 and G D 2
ChainResidue
CHIS830
CHIS847
CPRO848
CPHE853
CLYS858
CLYS861
CGLY874
CILE875
CLYS888
DA3
DC25

site_idAD6
Number of Residues10
Detailsbinding site for Di-nucleotide M7G F 101 and G F 2
ChainResidue
EHIS830
EHIS847
EPHE853
ELYS858
ELYS861
EILE875
EVAL886
ELYS888
FA3
FC25

site_idAD7
Number of Residues10
Detailsbinding site for Di-nucleotide M7G H 101 and G H 2
ChainResidue
GHIS830
GHIS847
GPHE853
GLYS858
GLYS861
GGLY874
GILE875
GLYS888
HA3
HC25

site_idAD8
Number of Residues11
Detailsbinding site for Di-nucleotide M7G J 101 and G J 2
ChainResidue
IHIS830
IHIS847
IPHE853
ILYS858
ILYS861
IASP872
IGLY874
IILE875
ILYS888
JA3
JC25

site_idAD9
Number of Residues10
Detailsbinding site for Di-nucleotide M7G L 101 and G L 2
ChainResidue
KHIS830
KHIS847
KPHE853
KLYS858
KLYS861
KASP872
KILE875
KLYS888
LA3
LC25

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1074
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsMotif: {"description":"DECH box"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues42
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01125","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues7
DetailsModified residue: {"description":"(Microbial infection) Deamidated asparagine; by herpes simplex virus 1/HHV-1 UL37","evidences":[{"source":"PubMed","id":"27866900","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues6
DetailsModified residue: {"description":"Phosphothreonine; by CK2","evidences":[{"source":"PubMed","id":"21068236","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues12
DetailsModified residue: {"description":"Phosphoserine; by CK2","evidences":[{"source":"PubMed","id":"21068236","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues6
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues6
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"26746851","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues12
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"Q6Q899","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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