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5F5A

Crystal Structure of human JMJD2D complexed with KDOAM16

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 402
ChainResidue
AHIS192
AGLU194
AHIS280
A5V0403
AHOH529

site_idAC3
Number of Residues17
Detailsbinding site for residue 5V0 A 403
ChainResidue
ATYR136
ATYR181
APHE189
AHIS192
AGLU194
ASER200
AASN202
ALYS210
ATRP212
AHIS280
AALA292
AILE293
AASN294
ANI402
AHOH510
AHOH529
AHOH766

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
AGLU224
AARG228
AGLY239
AALA240
APHE241
ALEU242
AHOH742

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
AGLU27
ATYR37
AHOH544
AHOH591
AHOH592

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO A 406
ChainResidue
APHE31
ALYS150
AGLN151
ATRP152
AASN153
AHOH501
AHOH523
AHOH564

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 407
ChainResidue
ALYS50
AILE264
ATHR265
AGLU267
AEDO415
AHOH752

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
AALA83
AGLY84
ATRP126
ASER250
ATHR252
AHOH514
AHOH565

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
AHIS103
AASN106
AHOH511
AHOH553

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 410
ChainResidue
APRO251
ALYS255
AARG263

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 411
ChainResidue
AILE20
APHE21
AHOH547
AHOH585
AHOH782

site_idAD3
Number of Residues1
Detailsbinding site for residue EDO A 412
ChainResidue
APHE261

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 413
ChainResidue
AHIS22
AGLU27
ATYR34
AHOH520

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO A 414
ChainResidue
ASER80
AGLY81
AVAL85
ATHR87
ACYS168
AHOH503

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 415
ChainResidue
APHE118
AGLU122
AILE264
ATHR265
AEDO407

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO A 416
ChainResidue
AASN13
AGLY258
AILE259
APRO260
AHOH547
AHOH597
AHOH632
AHOH651

site_idAD8
Number of Residues6
Detailsbinding site for residue SO4 A 417
ChainResidue
AHOH534
AHOH537
AARG60
AGLU61
ATHR62
AASN65

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 A 418
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAE1
Number of Residues7
Detailsbinding site for residue SO4 A 419
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH513
AHOH736

site_idAE2
Number of Residues2
Detailsbinding site for residue SO4 A 420
ChainResidue
ATYR303
AMET306

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

222624

PDB entries from 2024-07-17

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