5F5A
Crystal Structure of human JMJD2D complexed with KDOAM16
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 401 |
| Chain | Residue |
| A | CYS238 |
| A | HIS244 |
| A | CYS310 |
| A | CYS312 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue NI A 402 |
| Chain | Residue |
| A | HIS192 |
| A | GLU194 |
| A | HIS280 |
| A | 5V0403 |
| A | HOH529 |
| site_id | AC3 |
| Number of Residues | 17 |
| Details | binding site for residue 5V0 A 403 |
| Chain | Residue |
| A | TYR136 |
| A | TYR181 |
| A | PHE189 |
| A | HIS192 |
| A | GLU194 |
| A | SER200 |
| A | ASN202 |
| A | LYS210 |
| A | TRP212 |
| A | HIS280 |
| A | ALA292 |
| A | ILE293 |
| A | ASN294 |
| A | NI402 |
| A | HOH510 |
| A | HOH529 |
| A | HOH766 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 404 |
| Chain | Residue |
| A | GLU224 |
| A | ARG228 |
| A | GLY239 |
| A | ALA240 |
| A | PHE241 |
| A | LEU242 |
| A | HOH742 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 405 |
| Chain | Residue |
| A | GLU27 |
| A | TYR37 |
| A | HOH544 |
| A | HOH591 |
| A | HOH592 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue EDO A 406 |
| Chain | Residue |
| A | PHE31 |
| A | LYS150 |
| A | GLN151 |
| A | TRP152 |
| A | ASN153 |
| A | HOH501 |
| A | HOH523 |
| A | HOH564 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 407 |
| Chain | Residue |
| A | LYS50 |
| A | ILE264 |
| A | THR265 |
| A | GLU267 |
| A | EDO415 |
| A | HOH752 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 408 |
| Chain | Residue |
| A | ALA83 |
| A | GLY84 |
| A | TRP126 |
| A | SER250 |
| A | THR252 |
| A | HOH514 |
| A | HOH565 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 409 |
| Chain | Residue |
| A | HIS103 |
| A | ASN106 |
| A | HOH511 |
| A | HOH553 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 410 |
| Chain | Residue |
| A | PRO251 |
| A | LYS255 |
| A | ARG263 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 411 |
| Chain | Residue |
| A | ILE20 |
| A | PHE21 |
| A | HOH547 |
| A | HOH585 |
| A | HOH782 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue EDO A 412 |
| Chain | Residue |
| A | PHE261 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 413 |
| Chain | Residue |
| A | HIS22 |
| A | GLU27 |
| A | TYR34 |
| A | HOH520 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 414 |
| Chain | Residue |
| A | SER80 |
| A | GLY81 |
| A | VAL85 |
| A | THR87 |
| A | CYS168 |
| A | HOH503 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue EDO A 415 |
| Chain | Residue |
| A | PHE118 |
| A | GLU122 |
| A | ILE264 |
| A | THR265 |
| A | EDO407 |
| site_id | AD7 |
| Number of Residues | 8 |
| Details | binding site for residue EDO A 416 |
| Chain | Residue |
| A | ASN13 |
| A | GLY258 |
| A | ILE259 |
| A | PRO260 |
| A | HOH547 |
| A | HOH597 |
| A | HOH632 |
| A | HOH651 |
| site_id | AD8 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 417 |
| Chain | Residue |
| A | HOH534 |
| A | HOH537 |
| A | ARG60 |
| A | GLU61 |
| A | THR62 |
| A | ASN65 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 418 |
| Chain | Residue |
| A | ARG123 |
| A | LYS124 |
| A | LYS127 |
| A | ASN128 |
| site_id | AE1 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 419 |
| Chain | Residue |
| A | PRO113 |
| A | LYS124 |
| A | ASN128 |
| A | TRP185 |
| A | LYS186 |
| A | HOH513 |
| A | HOH736 |
| site_id | AE2 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 420 |
| Chain | Residue |
| A | TYR303 |
| A | MET306 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 42 |
| Details | Domain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 166 |
| Details | Domain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
