5F5A
Crystal Structure of human JMJD2D complexed with KDOAM16
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Lysine-specific demethylase 4D | polymer | 346 | 40017.3 | 1 | UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373) In PDB | Homo sapiens (Human) | JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D |
2 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
3 | A | NICKEL (II) ION | non-polymer | 58.7 | 1 | Chemie (NI) | |||
4 | A | 2-[(furan-2-ylmethylamino)methyl]pyridine-4-carboxylic acid | non-polymer | 232.2 | 1 | Chemie (5V0) | |||
5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 13 | Chemie (EDO) | |||
6 | A | SULFATE ION | non-polymer | 96.1 | 4 | Chemie (SO4) | |||
7 | water | water | 18.0 | 344 | Chemie (HOH) |
Sequence modifications
A: 1 - 342 (UniProt: Q6B0I6)
PDB | External Database | Details |
---|---|---|
Tyr -3 | - | expression tag |
Phe -2 | - | expression tag |
Gln -1 | - | expression tag |
Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 40017.3 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 1547.5 | |
All* | Total formula weight | 41564.8 |