5E3R

Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0005737	cellular_component	cytoplasm
A	0008652	biological_process	amino acid biosynthetic process
A	0008666	molecular_function	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
A	0009085	biological_process	L-lysine biosynthetic process
A	0009089	biological_process	L-lysine biosynthetic process via diaminopimelate
A	0016740	molecular_function	transferase activity
A	0016746	molecular_function	acyltransferase activity
A	0019877	biological_process	diaminopimelate biosynthetic process
A	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	binding site for residue NPI A 401

Chain	Residue
A	PHE90
A	ARG143
A	ARG151
A	PHE167
A	ASN169
A	GLU181
A	SER185
A	ALA186

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Active site: {"description":"Acyl-anhydride intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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