5E3R

Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0005737	cellular_component	cytoplasm
A	0008666	molecular_function	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
A	0009085	biological_process	lysine biosynthetic process
A	0009089	biological_process	lysine biosynthetic process via diaminopimelate
A	0016746	molecular_function	acyltransferase activity
A	0019877	biological_process	diaminopimelate biosynthetic process
A	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	binding site for residue NPI A 401

Chain	Residue
A	PHE90
A	ARG143
A	ARG151
A	PHE167
A	ASN169
A	GLU181
A	SER185
A	ALA186

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	ACT_SITE: Acyl-anhydride intermediate => ECO:0000255|HAMAP-Rule:MF_02122

Chain	Residue	Details
A	GLU181

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site_id	SWS_FT_FI2
Number of Residues	10
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02122

Chain	Residue	Details
A	ASP148
A	ARG271
A	GLU165
A	ARG183
A	GLY198
A	SER201
A	ALA224
A	GLU239
A	GLY247
A	LYS258

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