5E3R
Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-03-15 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | H 3 2 |
Unit cell lengths | 92.446, 92.446, 279.602 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 93.200 - 1.850 |
R-factor | 0.179 |
Rwork | 0.178 |
R-free | 0.20570 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5e3p |
RMSD bond length | 0.023 |
RMSD bond angle | 2.132 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | CNS |
Refinement software | REFMAC (5.8.0131) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.200 | 1.830 |
High resolution limit [Å] | 1.850 | 1.800 |
Number of reflections | 36690 | |
<I/σ(I)> | 32.36 | 4.15 |
Completeness [%] | 97.8 | 97.8 |
Redundancy | 5.1 | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | PEG 200, MgCl2 |