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5DK4

Crystal structure analysis of Tryptophanyl-trna synthetase from Bacillus stearothermophilus in complex with indolmycin and Mg*ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004830molecular_functiontryptophan-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006436biological_processtryptophanyl-tRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues28
Detailsbinding site for residue ATP A 401
ChainResidue
AILE8
AASP146
AGLY180
AALA181
AARG182
AILE183
ALYS192
AMSE193
ASER194
ALYS195
ASER196
AGLN9
AMG402
A5BX404
AHOH520
AHOH525
AHOH537
AHOH548
AHOH589
AHOH591
AHOH619
ASER11
AGLY17
AASN18
AGLY21
ALYS111
AVAL143
AGLY144

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AGLN9
AATP401
A5BX404
AHOH525
AHOH589
AHOH591

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 403
ChainResidue
ALYS218
ATHR222
ATYR265
AGLY266
ALYS269

site_idAC4
Number of Residues14
Detailsbinding site for residue 5BX A 404
ChainResidue
APHE5
ASER6
AGLY7
AGLN9
AHIS43
ATYR125
AMSE129
AASP132
AVAL143
AGLN147
AATP401
AMG402
AHOH525
AHOH589

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues10
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. P..SGvITIGNY
ChainResidueDetails
APRO10-TYR19

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00140, ECO:0000269|PubMed:26555258, ECO:0007744|PDB:5DK4
ChainResidueDetails
AGLN9
AGLY17
AASP132
AGLY144
AILE183
ALYS192

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 481
ChainResidueDetails
ALYS111electrostatic stabiliser
ALYS192electrostatic stabiliser
ALYS195electrostatic stabiliser

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PDB entries from 2024-10-16

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