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5CX6

Crystal structure of Thosea asigna virus RNA-dependent RNA polymerase (RdRP) complexed with CDP

Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue SO4 A 701
ChainResidue
AARG62
ASER66
BARG668

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 702
ChainResidue
AARG269
AARG545
AARG564
AALA610
AHOH810
AHOH824

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 703
ChainResidue
ALYS246
AASP247
ALEU248
ATHR249
AHOH916
BLYS433

site_idAC4
Number of Residues6
Detailsbinding site for residue SO4 A 704
ChainResidue
AVAL440
AGLY442
ATHR443
ATHR444
AHOH930
AHOH975

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 705
ChainResidue
AALA214
ASER215
ALYS264
ATYR282
AHOH849

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 706
ChainResidue
AARG54
AARG137
BLYS181

site_idAC7
Number of Residues8
Detailsbinding site for residue SO4 A 707
ChainResidue
AARG164
ALYS278
AARG280
APHE370
ALYS371
AGLN372
AHOH803
AHOH811

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 708
ChainResidue
ATYR349
AGLY350
AASP351
APHE613
AHOH809

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL A 709
ChainResidue
ALYS433
BLYS246
BASP247
BLEU248
BTHR249
BHOH842
BHOH851

site_idAD1
Number of Residues3
Detailsbinding site for residue GOL A 710
ChainResidue
ATYR92
AGOL711
BARG429

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL A 711
ChainResidue
AARG429
AGOL710
BARG429
BHOH971
BHOH1062

site_idAD3
Number of Residues3
Detailsbinding site for residue GOL A 712
ChainResidue
ATYR611
AALA612
APHE613

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL A 713
ChainResidue
AHIS110
AVAL118
ALYS119
AARG120
AGLU262
ALYS264
AGOL716
AHOH940

site_idAD5
Number of Residues4
Detailsbinding site for residue GOL A 714
ChainResidue
AARG22
AARG35
ALYS36
ASER659

site_idAD6
Number of Residues2
Detailsbinding site for residue GOL A 715
ChainResidue
AARG12
BILE213

site_idAD7
Number of Residues7
Detailsbinding site for residue GOL A 716
ChainResidue
ATHR109
AHIS110
AVAL118
ALYS119
AGOL713
AHOH920
AHOH1014

site_idAD8
Number of Residues3
Detailsbinding site for residue GOL A 717
ChainResidue
ATHR223
AARG225
AASP226

site_idAD9
Number of Residues3
Detailsbinding site for residue GOL A 718
ChainResidue
ATHR308
AGLU309
AASP328

site_idAE1
Number of Residues6
Detailsbinding site for residue GOL A 719
ChainResidue
APRO93
AVAL94
AGLY96
ALYS254
AHIS255
AHOH974

site_idAE2
Number of Residues3
Detailsbinding site for residue MG A 720
ChainResidue
ALEU232
AHOH813
BHOH916

site_idAE3
Number of Residues10
Detailsbinding site for residue CDP A 721
ChainResidue
ATHR560
AASP563
AMET597
AVAL599
AGLN600
AGLU601
AHOH972
ATHR553
AMET556
AARG559

site_idAE4
Number of Residues6
Detailsbinding site for residue SO4 B 701
ChainResidue
ALYS341
BPRO46
BTYR628
BHOH848
BHOH874
BHOH906

site_idAE5
Number of Residues7
Detailsbinding site for residue SO4 B 702
ChainResidue
BARG269
BPRO544
BARG545
BARG564
BALA610
BHOH883
BHOH1011

site_idAE6
Number of Residues5
Detailsbinding site for residue SO4 B 703
ChainResidue
BALA214
BSER215
BLYS264
BTYR282
BHOH956

site_idAE7
Number of Residues7
Detailsbinding site for residue SO4 B 704
ChainResidue
BVAL440
BGLY442
BTHR443
BTHR444
BHOH838
BHOH843
BHOH936

site_idAE8
Number of Residues6
Detailsbinding site for residue SO4 B 705
ChainResidue
BARG164
BLYS278
BARG280
BPHE370
BGLN372
BLYS488

site_idAE9
Number of Residues7
Detailsbinding site for residue GOL B 706
ChainResidue
BSER320
BTHR322
BASN323
BTHR615
BARG616
BHOH812
BHOH958

site_idAF1
Number of Residues7
Detailsbinding site for residue GOL B 707
ChainResidue
BHIS110
BVAL118
BLYS119
BARG120
BGLU262
BLYS264
BHOH817

site_idAF2
Number of Residues6
Detailsbinding site for residue GOL B 708
ChainResidue
BHIS110
BASN111
BSER117
BVAL118
BLYS119
BHOH817

site_idAF3
Number of Residues4
Detailsbinding site for residue GOL B 709
ChainResidue
BARG22
BARG35
BLYS36
BSER659

site_idAF4
Number of Residues5
Detailsbinding site for residue GOL B 710
ChainResidue
BTYR349
BGLY350
BASP351
BHOH806
BHOH809

site_idAF5
Number of Residues3
Detailsbinding site for residue GOL B 711
ChainResidue
BLEU513
BALA612
BPHE613

site_idAF6
Number of Residues5
Detailsbinding site for residue GOL B 712
ChainResidue
ALYS342
APRO343
BARG42
BLEU44
BHOH897

site_idAF7
Number of Residues10
Detailsbinding site for residue CDP B 713
ChainResidue
BMET556
BARG559
BTHR560
BASP563
BMET597
BVAL599
BGLN600
BGLU601
BALA607
BHOH834

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PDB entries from 2024-07-24

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