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5C46

Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta in complex with GTP gamma S loaded Rab11

Functional Information from GO Data
ChainGOidnamespacecontents
E0016301molecular_functionkinase activity
E0046854biological_processphosphatidylinositol phosphate biosynthetic process
F0000139cellular_componentGolgi membrane
F0000166molecular_functionnucleotide binding
F0000922cellular_componentspindle pole
F0003924molecular_functionGTPase activity
F0003925molecular_functionG protein activity
F0005515molecular_functionprotein binding
F0005525molecular_functionGTP binding
F0005737cellular_componentcytoplasm
F0005768cellular_componentendosome
F0005771cellular_componentmultivesicular body
F0005794cellular_componentGolgi apparatus
F0005802cellular_componenttrans-Golgi network
F0005813cellular_componentcentrosome
F0005814cellular_componentcentriole
F0005828cellular_componentkinetochore microtubule
F0005829cellular_componentcytosol
F0005886cellular_componentplasma membrane
F0006887biological_processexocytosis
F0007049biological_processcell cycle
F0007080biological_processmitotic metaphase chromosome alignment
F0008017molecular_functionmicrotubule binding
F0010008cellular_componentendosome membrane
F0010634biological_processpositive regulation of epithelial cell migration
F0010796biological_processregulation of multivesicular body size
F0010971biological_processpositive regulation of G2/M transition of mitotic cell cycle
F0015031biological_processprotein transport
F0016020cellular_componentmembrane
F0016192biological_processvesicle-mediated transport
F0016787molecular_functionhydrolase activity
F0019905molecular_functionsyntaxin binding
F0030133cellular_componenttransport vesicle
F0030659cellular_componentcytoplasmic vesicle membrane
F0030666cellular_componentendocytic vesicle membrane
F0030953biological_processastral microtubule organization
F0031175biological_processneuron projection development
F0031410cellular_componentcytoplasmic vesicle
F0031489molecular_functionmyosin V binding
F0031982cellular_componentvesicle
F0032154cellular_componentcleavage furrow
F0032402biological_processmelanosome transport
F0032465biological_processregulation of cytokinesis
F0032588cellular_componenttrans-Golgi network membrane
F0032991cellular_componentprotein-containing complex
F0034394biological_processprotein localization to cell surface
F0034451cellular_componentcentriolar satellite
F0036258biological_processmultivesicular body assembly
F0043001biological_processGolgi to plasma membrane protein transport
F0043231cellular_componentintracellular membrane-bounded organelle
F0045335cellular_componentphagocytic vesicle
F0048227biological_processplasma membrane to endosome transport
F0051650biological_processestablishment of vesicle localization
F0051959molecular_functiondynein light intermediate chain binding
F0055037cellular_componentrecycling endosome
F0055038cellular_componentrecycling endosome membrane
F0060627biological_processregulation of vesicle-mediated transport
F0061502biological_processearly endosome to recycling endosome transport
F0061512biological_processprotein localization to cilium
F0070062cellular_componentextracellular exosome
F0071806biological_processprotein transmembrane transport
F0072594biological_processestablishment of protein localization to organelle
F0072659biological_processprotein localization to plasma membrane
F0090150biological_processestablishment of protein localization to membrane
F0090307biological_processmitotic spindle assembly
F0098837cellular_componentpostsynaptic recycling endosome
F0098887biological_processneurotransmitter receptor transport, endosome to postsynaptic membrane
F0098978cellular_componentglutamatergic synapse
F0150093biological_processamyloid-beta clearance by transcytosis
F1902017biological_processregulation of cilium assembly
F1902954biological_processregulation of early endosome to recycling endosome transport
F1903438biological_processpositive regulation of mitotic cytokinetic process
F1904779biological_processregulation of protein localization to centrosome
F1990182biological_processexosomal secretion
F2001135biological_processregulation of endocytic recycling
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue SO4 E 801
ChainResidue
EHIS605
ELYS608

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 E 802
ChainResidue
ETYR183
ELYS195
EARG232
EGLY233
ELYS235
ELEU236

site_idAC3
Number of Residues23
Detailsbinding site for residue GSP F 2000
ChainResidue
FSER20
FGLY21
FVAL22
FGLY23
FLYS24
FSER25
FASN26
FPHE36
FASN37
FLEU38
FSER40
FSER42
FTHR43
FGLY69
FASN124
FLYS125
FASP127
FLEU128
FSER154
FALA155
FLEU156
FMG2001
EGLY155

site_idAC4
Number of Residues3
Detailsbinding site for residue MG F 2001
ChainResidue
FSER25
FTHR43
FGSP2000

Functional Information from PROSITE/UniProt
site_idPS00915
Number of Residues15
DetailsPI3_4_KINASE_1 Phosphatidylinositol 3- and 4-kinases signature 1. VKcg.DDLRQEllafQ
ChainResidueDetails
EVAL548-GLN562

site_idPS00916
Number of Residues21
DetailsPI3_4_KINASE_2 Phosphatidylinositol 3- and 4-kinases signature 2. ScAgycLvcYLLqVkDRHngN
ChainResidueDetails
ESER641-ASN661

site_idPS00675
Number of Residues14
DetailsSIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VVLiGDSGVGKsnL
ChainResidueDetails
FVAL14-LEU27

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:16905101, ECO:0000269|PubMed:17007872, ECO:0000269|PubMed:17030804, ECO:0007744|PDB:2D7C, ECO:0007744|PDB:2GZD, ECO:0007744|PDB:2GZH, ECO:0007744|PDB:2HV8, ECO:0007744|PDB:5EZ5
ChainResidueDetails
FGLY18
FASN124
FSER154

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0007744|PDB:2D7C, ECO:0007744|PDB:2GZD, ECO:0007744|PDB:2GZH, ECO:0007744|PDB:2HV8, ECO:0007744|PDB:5EZ5
ChainResidueDetails
FASN37
EPRO577
ELYS519

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:16905101, ECO:0000269|PubMed:17007872, ECO:0000269|PubMed:17030804, ECO:0007744|PDB:1OIW, ECO:0007744|PDB:4D0L, ECO:0007744|PDB:4D0M, ECO:0007744|PDB:5C46, ECO:0007744|PDB:5FBL
ChainResidueDetails
FASP66

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylglycine => ECO:0000269|Ref.11
ChainResidueDetails
FGLY2
EARG323

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Cysteine methyl ester => ECO:0000255
ChainResidueDetails
FCYS213

site_idSWS_FT_FI6
Number of Residues2
DetailsLIPID: S-geranylgeranyl cysteine => ECO:0000269|PubMed:24023390
ChainResidueDetails
FCYS212
FCYS213

site_idSWS_FT_FI7
Number of Residues1
DetailsCARBOHYD: (Microbial infection) N-beta-linked (GlcNAc) arginine => ECO:0000269|PubMed:32974215
ChainResidueDetails
FARG4

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:11277933, ECO:0007744|PubMed:18220336, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
EGLU511

site_idSWS_FT_FI9
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
EALA517

218853

PDB entries from 2024-04-24

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