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5BTD

Crystal structure of a topoisomerase II complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006259biological_processDNA metabolic process
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
C0003677molecular_functionDNA binding
C0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
C0005524molecular_functionATP binding
C0006259biological_processDNA metabolic process
C0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG B 701
ChainResidue
BASP532
BASP534
BHOH804
BHOH807
BHOH810
BHOH821

site_idAC2
Number of Residues7
Detailsbinding site for residue MG D 701
ChainResidue
DHOH801
DHOH805
DHOH806
DHOH812
DGLU459
DASP532
DASP534

site_idAC3
Number of Residues18
Detailsbinding site for residue GFN E 101
ChainResidue
AALA90
AHOH615
BARG482
BGLY483
CARG128
CPTR129
EDT10
EDG11
EMG102
EHOH202
EHOH203
EHOH205
FDC14
FDA15
GDT10
GDA11
HDT14
HDA15

site_idAC4
Number of Residues6
Detailsbinding site for residue MG E 102
ChainResidue
AHOH615
EDT10
EGFN101
EHOH202
EHOH203
EHOH210

site_idAC5
Number of Residues5
Detailsbinding site for residue MG F 101
ChainResidue
CHOH612
FHOH203
GGFN101
GHOH202
GHOH204

site_idAC6
Number of Residues19
Detailsbinding site for residue GFN G 101
ChainResidue
AARG128
APTR129
CALA90
CHOH612
DARG482
DGLY483
EDT14
EDA15
FDT10
FDA11
FMG101
FHOH203
GDC14
GDA15
GHOH202
GHOH203
GHOH204
HDT10
HDG11

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. VVEGDSAGG
ChainResidueDetails
BVAL457-GLY465

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BGLU459
BASP532
BASP534
DGLU459
DASP532
DASP534

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS484
BASN487
DLYS484
DASN487

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PDB entries from 2024-07-10

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