5AWH
Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004520 | molecular_function | DNA endonuclease activity |
| A | 0044355 | biological_process | clearance of foreign intracellular DNA |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0004520 | molecular_function | DNA endonuclease activity |
| B | 0044355 | biological_process | clearance of foreign intracellular DNA |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 101 |
| Chain | Residue |
| A | LEU777 |
| A | HOH851 |
| C | U1 |
| C | A3 |
| C | HOH209 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue MG E 101 |
| Chain | Residue |
| E | A3 |
| E | HOH206 |
| B | LEU777 |
| B | HOH893 |
| E | U1 |
| E | U2 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 312 |
| Details | Domain: {"description":"Piwi","evidences":[{"source":"PROSITE-ProRule","id":"PRU00150","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 148 |
| Details | Region: {"description":"Linker L1","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 60 |
| Details | Region: {"description":"PAZ domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 194 |
| Details | Region: {"description":"Linker L2","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 334 |
| Details | Region: {"description":"Mid domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 267 |
| Details | Region: {"description":"PIWI domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29996105","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5AWH","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"6D8P","evidenceCode":"ECO:0000312"}]} |
| Chain | Residue | Details |
