4Z1D
Structure of PEP and zinc bound KDO8PS from H.pylori
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0008676 | molecular_function | 3-deoxy-8-phosphooctulonate synthase activity |
| A | 0009058 | biological_process | biosynthetic process |
| A | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0019294 | biological_process | keto-3-deoxy-D-manno-octulosonic acid biosynthetic process |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0008676 | molecular_function | 3-deoxy-8-phosphooctulonate synthase activity |
| B | 0009058 | biological_process | biosynthetic process |
| B | 0009103 | biological_process | lipopolysaccharide biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0019294 | biological_process | keto-3-deoxy-D-manno-octulosonic acid biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 14 |
| Details | binding site for residue PEP A 300 |
| Chain | Residue |
| A | LYS47 |
| A | PHE239 |
| A | HOH423 |
| A | HOH445 |
| A | HOH512 |
| A | HOH544 |
| A | SER49 |
| A | LYS52 |
| A | GLN105 |
| A | PRO107 |
| A | ALA108 |
| A | LYS130 |
| A | ARG173 |
| A | HIS204 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 301 |
| Chain | Residue |
| A | CYS18 |
| A | HIS204 |
| A | GLU241 |
| A | ASP252 |
| site_id | AC3 |
| Number of Residues | 14 |
| Details | binding site for residue PEP B 300 |
| Chain | Residue |
| B | LYS47 |
| B | SER49 |
| B | LYS52 |
| B | GLN105 |
| B | PRO107 |
| B | ALA108 |
| B | LYS130 |
| B | ARG173 |
| B | HIS204 |
| B | PHE239 |
| B | HOH405 |
| B | HOH459 |
| B | HOH500 |
| B | HOH545 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 301 |
| Chain | Residue |
| B | CYS18 |
| B | THR203 |
| B | HIS204 |
| B | GLU241 |
| B | ASP252 |
