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4YV0

Crystal structure of Trypanosoma cruzi spermidine synthase in complex with (2S)-N-methyl-N-phenyl-2,3-dihydro-1,4-benzodioxine- 2-carboxamid

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004766molecular_functionspermidine synthase activity
A0006596biological_processpolyamine biosynthetic process
A0016740molecular_functiontransferase activity
B0003824molecular_functioncatalytic activity
B0004766molecular_functionspermidine synthase activity
B0006596biological_processpolyamine biosynthetic process
B0016740molecular_functiontransferase activity
C0003824molecular_functioncatalytic activity
C0004766molecular_functionspermidine synthase activity
C0006596biological_processpolyamine biosynthetic process
C0016740molecular_functiontransferase activity
D0003824molecular_functioncatalytic activity
D0004766molecular_functionspermidine synthase activity
D0006596biological_processpolyamine biosynthetic process
D0016740molecular_functiontransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue S4M A 301
ChainResidue
AGLN40
AASP120
AVAL123
AGLY148
AASP149
AGLY150
AASP168
ATHR169
ATHR170
ALEU59
ATYR73
AHIS74
AGLY95
AASP98
AVAL117
AASP118
AILE119

site_idAC2
Number of Residues19
Detailsbinding site for residue S4M B 301
ChainResidue
BGLN40
BMET57
BGLN64
BHIS74
BGLY95
BASP98
BVAL117
BASP118
BILE119
BASP120
BVAL123
BASP149
BGLY150
BASP168
BTHR169
BTHR170
BPRO175
BALA176
BLEU179

site_idAC3
Number of Residues12
Detailsbinding site for residue 4JW B 302
ChainResidue
AGLU14
AMET24
ALEU26
ATRP53
APRO235
ATHR236
BGLU14
BGLN22
BALA23
BTYR237
BPRO238
BCYS239

site_idAC4
Number of Residues18
Detailsbinding site for residue S4M C 301
ChainResidue
CGLN40
CLEU59
CGLN64
CTYR73
CHIS74
CGLY95
CASP98
CVAL117
CASP118
CILE119
CASP120
CVAL123
CGLY148
CASP149
CGLY150
CASP168
CTHR169
CTHR170

site_idAC5
Number of Residues19
Detailsbinding site for residue S4M D 301
ChainResidue
DGLN40
DMET57
DLEU59
DGLN64
DTYR73
DHIS74
DGLY95
DASP98
DVAL117
DASP118
DILE119
DASP120
DVAL123
DASP149
DGLY150
DASP168
DTHR169
DTHR170
DPRO175

site_idAC6
Number of Residues12
Detailsbinding site for residue 4JW D 302
ChainResidue
CGLU14
CMET24
CTRP53
CPRO235
CTHR236
DTRP19
DGLN22
DALA23
DTHR236
DTYR237
DPRO238
DCYS239

Functional Information from PROSITE/UniProt
site_idPS01330
Number of Residues14
DetailsPABS_1 Polyamine biosynthesis (PABS) domain signature. VLIIGGGdGgvLrE
ChainResidueDetails
AVAL91-GLU104

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PDB entries from 2024-10-30

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