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4XBF

Structure of LSD1:CoREST in complex with ssRNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
A0016491molecular_functionoxidoreductase activity
A0050660molecular_functionflavin adenine dinucleotide binding
Functional Information from PDB Data
site_idAC1
Number of Residues35
Detailsbinding site for residue FAD A 901
ChainResidue
AGLY285
AARG316
AVAL317
ALEU329
AGLY330
AALA331
AMET332
AVAL333
ATHR588
AVAL590
ATHR624
AGLY287
ALEU625
APRO626
AVAL637
ATRP751
ATRP756
ASER760
ATYR761
AGLY800
AGLU801
ATHR810
AVAL288
AVAL811
AALA814
AHOH1003
AHOH1004
AHOH1011
AHOH1015
ASER289
AGLU308
AALA309
AARG310
AGLY314
AGLY315

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 902
ChainResidue
ATRP751
AASP754
ASO4903

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 903
ChainResidue
AARG310
AARG312
ASO4902

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 904
ChainResidue
ALYS374
ASER522
AARG524

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 905
ChainResidue
ASER687
AGLU690
BLEU389

site_idAC6
Number of Residues2
Detailsbinding site for residue SO4 A 906
ChainResidue
ATHR189
ASER190

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL A 907
ChainResidue
AGLY409
AGLU413
AARG526
APHE533
AARG688

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000269|PubMed:16885027, ECO:0000269|PubMed:16956976, ECO:0000269|PubMed:21300290, ECO:0000269|PubMed:23721412, ECO:0007744|PDB:2DW4, ECO:0007744|PDB:2H94, ECO:0007744|PDB:2HKO, ECO:0007744|PDB:2IW5, ECO:0007744|PDB:2V1D, ECO:0007744|PDB:2X0L, ECO:0007744|PDB:2XAF, ECO:0007744|PDB:2XAG, ECO:0007744|PDB:2XAH, ECO:0007744|PDB:2XAJ, ECO:0007744|PDB:2XAQ, ECO:0007744|PDB:2XAS, ECO:0007744|PDB:2Y48, ECO:0007744|PDB:3ZMS, ECO:0007744|PDB:3ZMT, ECO:0007744|PDB:3ZMU, ECO:0007744|PDB:3ZMV, ECO:0007744|PDB:3ZMZ, ECO:0007744|PDB:3ZN0, ECO:0007744|PDB:3ZN1
ChainResidueDetails
ASER289
AGLU308
AARG310
AARG316
AMET332
AGLU801
ATHR810

site_idSWS_FT_FI2
Number of Residues3
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:27292636
ChainResidueDetails
ALYS432
ALYS433
ALYS436

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER611

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS442
ALYS469

site_idSWS_FT_FI5
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:25018020
ChainResidueDetails
ALYS503

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PDB entries from 2024-09-18

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