4XA5
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating A and an incoming 8-oxo-dGTP
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 23 |
| Details | binding site for residue 8DG A 601 |
| Chain | Residue |
| A | ARG386 |
| A | THR507 |
| A | GLY508 |
| A | ALA510 |
| A | ASN513 |
| A | MG602 |
| A | HOH746 |
| A | HOH768 |
| A | HOH785 |
| A | HOH818 |
| A | HOH843 |
| A | GLY416 |
| A | HOH877 |
| A | HOH878 |
| P | DOC6 |
| T | DA5 |
| A | SER417 |
| A | ARG420 |
| A | GLY426 |
| A | ASP427 |
| A | ASP429 |
| A | TYR505 |
| A | PHE506 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 602 |
| Chain | Residue |
| A | ASP427 |
| A | ASP429 |
| A | 8DG601 |
| A | HOH768 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 603 |
| Chain | Residue |
| A | SER339 |
| A | ILE341 |
| A | ALA344 |
| A | HOH760 |
| P | DA5 |
| P | HOH110 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 604 |
| Chain | Residue |
| A | ARG389 |
| A | TYR418 |
| A | HOH786 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue ACT A 605 |
| Chain | Residue |
| A | HIS440 |
| A | GLY442 |
| A | ILE443 |
| A | PHE444 |
| A | GLY468 |
| A | GLN470 |
| A | VAL493 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue ACT A 606 |
| Chain | Residue |
| A | TYR267 |
| A | GLN270 |
| A | SER329 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 607 |
| Chain | Residue |
| A | ARG452 |
| A | LEU457 |
| A | THR458 |
| A | ASP459 |
| A | ASP460 |
| A | HOH874 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue GOL A 608 |
| Chain | Residue |
| A | GLN471 |
| A | VAL493 |
| A | VAL494 |
| A | PRO495 |
| A | HIS530 |
| A | HOH770 |
| A | HOH860 |
Functional Information from PROSITE/UniProt
| site_id | PS00522 |
| Number of Residues | 20 |
| Details | DNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP |
| Chain | Residue | Details |
| A | GLY416-PRO435 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 56 |
| Details | Region: {"description":"DNA-binding","evidences":[{"source":"PubMed","id":"14992725","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 9 |
| Details | Region: {"description":"Involved in primer binding","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Schiff-base intermediate with DNA","evidences":[{"source":"PubMed","id":"11457865","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17475573","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PFP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PFQ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"17475573","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PFO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2PFQ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
