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4WI1

Crystal Structure of Prolyl-tRNA synthetase (ProRS, Proline--tRNA ligase) from Plasmodium falciparum in complex with TCMDC-124506

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004827molecular_functionproline-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006418biological_processtRNA aminoacylation for protein translation
A0006433biological_processprolyl-tRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004827molecular_functionproline-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006418biological_processtRNA aminoacylation for protein translation
B0006433biological_processprolyl-tRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue 3O6 A 801
ChainResidue
ATYR266
AILE518
AILE520
AMET521
ATYR285
AALA291
AARG403
AGLU404
AILE474
ATHR513
AILE516
AGLY517

site_idAC2
Number of Residues5
Detailsbinding site for residue EDO A 802
ChainResidue
AHIS248
ATYR585
AHIS589
AARG593
AHOH1146

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 803
ChainResidue
AALA290
ASER536
ALYS537
ATYR538
AHOH993
AHOH1043

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 804
ChainResidue
ALEU309
AASN310
ALYS381
AHOH1013
AHOH1131
AHOH1231

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 805
ChainResidue
APRO717
ALEU718
AARG738
AHOH1242
AHOH1258

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 806
ChainResidue
APHE459
AEDO807
AHOH1085

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 807
ChainResidue
AGLU417
AVAL421
APHE459
ATYR547
ALYS548
AEDO806
AHOH936

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 808
ChainResidue
ALYS258
AGLU469
ATHR522
AHIS523
AGLY524
ALYS651
AHOH1300

site_idAC9
Number of Residues4
Detailsbinding site for residue MG A 809
ChainResidue
ATHR362
AGLN384
AASN386
AGLU409

site_idAD1
Number of Residues5
Detailsbinding site for residue IMD A 810
ChainResidue
ALYS448
APHE454
AGLN475
ATHR478
AHIS480

site_idAD2
Number of Residues5
Detailsbinding site for residue CL A 811
ChainResidue
AMET364
ATYR365
ASER366
BASP280
BILE281

site_idAD3
Number of Residues13
Detailsbinding site for residue 3O6 B 801
ChainResidue
BTYR266
BTYR285
BLEU287
BALA291
BARG403
BGLU404
BILE474
BTHR513
BILE516
BILE518
BILE520
BMET521
BEDO804

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO B 802
ChainResidue
BASP525
BLYS527
BASP617
BASN619
BGLU688
BEDO807

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO B 803
ChainResidue
BSER536
BLYS537
BTYR538
BILE595
BHOH967
BHOH982

site_idAD6
Number of Residues4
Detailsbinding site for residue EDO B 804
ChainResidue
BSER263
BTYR746
B3O6801
BHOH1028

site_idAD7
Number of Residues6
Detailsbinding site for residue EDO B 805
ChainResidue
BHIS505
BGLU417
BASN458
BTYR481
BGLY483
BTHR484

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO B 806
ChainResidue
BLYS258
BGLU469
BHIS523
BGLY524
BLYS651
BHOH1137

site_idAD9
Number of Residues4
Detailsbinding site for residue EDO B 807
ChainResidue
BASP525
BASP526
BEDO802
BHOH1029

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO B 808
ChainResidue
BPRO717
BGLN720
BARG738
BHOH1227
BHOH1252

site_idAE2
Number of Residues6
Detailsbinding site for residue IMD B 809
ChainResidue
BTYR279
BTYR279
BASP280
BASP280
BGLU392
BGLU392

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|Ref.7, ECO:0007744|PDB:6T7K
ChainResidueDetails
AARG390
AHIS480
BARG390
BHIS480

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:25817387, ECO:0000269|PubMed:27798837, ECO:0000269|Ref.4, ECO:0007744|PDB:4OLF, ECO:0007744|PDB:4Q15, ECO:0007744|PDB:4YDQ
ChainResidueDetails
AARG401
AGLN475
ATHR512
BARG401
BGLN475
BTHR512

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PDB entries from 2024-07-17

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