4WI1
Crystal Structure of Prolyl-tRNA synthetase (ProRS, Proline--tRNA ligase) from Plasmodium falciparum in complex with TCMDC-124506
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-18 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.979490 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 148.180, 91.340, 110.910 |
Unit cell angles | 90.00, 129.53, 90.00 |
Refinement procedure
Resolution | 40.288 - 1.650 |
R-factor | 0.162 |
Rwork | 0.162 |
R-free | 0.18790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4q15 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.047 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: dev_1803)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.690 | |
High resolution limit [Å] | 1.650 | 7.380 | 1.650 |
Rmerge | 0.049 | 0.030 | 0.539 |
Rmeas | 0.056 | 0.035 | 0.615 |
Total number of observations | 564551 | ||
Number of reflections | 133468 | 1291 | 9725 |
<I/σ(I)> | 16.31 | 32.94 | 3.01 |
Completeness [%] | 97.2 | 79.4 | 96.2 |
Redundancy | 4.1 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 289 | at 21.9mg/ml, incubated with 5mM TCMDC-124506, then 1:1 with Morpheus(B2): 10% PEG-8000, 20% ethylene glycol, 0.1M MES/imidazole, pH=6.5, 0.03M each magnesium chloride, calcium chloride |