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4U6P

Structural mechanism of error-free bypass of major benzo[a]pyrene adduct by human polymerase kappa

Functional Information from GO Data
ChainGOidnamespacecontents
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 601
ChainResidue
AARG352
AVAL354
AILE357
AHOH713
CDA12
CHOH103

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 602
ChainResidue
AMG603
ADCT604
AASP107
AMET108
AASP198

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 603
ChainResidue
AASP107
AASP198
AGLU199
AMG602
ADCT604
AHOH745

site_idAC4
Number of Residues15
Detailsbinding site for residue DCT A 604
ChainResidue
AASP107
AALA110
ASER137
ATHR138
ATYR141
AARG144
AALA151
AASP198
ALYS328
AMG602
AMG603
AHOH735
AHOH745
CDC13
DDG5

site_idAC5
Number of Residues7
Detailsbinding site for residue PGE B 601
ChainResidue
BLYS459
BLYS461
BHOH705
PDT10
TDG5
TDG6
THOH105

site_idAC6
Number of Residues4
Detailsbinding site for residue MG B 602
ChainResidue
BARG352
BVAL354
BILE357
PDA12

site_idAC7
Number of Residues5
Detailsbinding site for residue MG B 603
ChainResidue
BASP107
BMET108
BASP198
BMG604
BDCT605

site_idAC8
Number of Residues5
Detailsbinding site for residue MG B 604
ChainResidue
BASP107
BGLU199
BMG603
BDCT605
BHOH722

site_idAC9
Number of Residues13
Detailsbinding site for residue DCT B 605
ChainResidue
BASP107
BMET108
BALA110
BSER137
BTHR138
BTYR141
BARG144
BASP198
BLYS328
BMG603
BMG604
PDC13
TDG5

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP107
AASP198
AGLU199
BASP107
BASP198
BGLU199

221051

PDB entries from 2024-06-12

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