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4RDN

Structure of YTH-YTHDF2 in complex with m6A

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 6MD A 601
ChainResidue
ALYS416
ALYS490
ATRP491
AASP528
AHOH706
AHOH715
AHOH788
AHOH810
ASER417
ATYR418
AASP422
ATRP432
ACYS433
ATHR435
AASN462
ATRP486

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 602
ChainResidue
AGLU436
AHIS437

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 603
ChainResidue
ALYS416
AVAL461
AGLY463
ASER464
AGLY465
AASN507
AHOH785
AHOH803

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 6MD B 601
ChainResidue
BLYS416
BSER417
BTYR418
BASP422
BTRP432
BCYS433
BASN462
BTRP486
BTRP491
BASP528
BHOH705
BHOH707
BHOH771
BHOH796

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 602
ChainResidue
BTHR435
BGLU436
BHIS437

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 603
ChainResidue
AHOH792
BLYS416
BVAL461
BGLY463
BSER464
BGLY465
BASN507
BTHR524

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues268
DetailsDomain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues14
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25412658","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4RDN","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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