4QKB
Crystal structure of seleno-methionine labelled human ALKBH7 in complex with alpha-ketoglutarate and Mn(II)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005739 | cellular_component | mitochondrion |
A | 0005759 | cellular_component | mitochondrial matrix |
A | 0006631 | biological_process | fatty acid metabolic process |
A | 0006974 | biological_process | DNA damage response |
A | 0010883 | biological_process | regulation of lipid storage |
A | 0012501 | biological_process | programmed cell death |
A | 0046872 | molecular_function | metal ion binding |
A | 0051213 | molecular_function | dioxygenase activity |
A | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
B | 0005515 | molecular_function | protein binding |
B | 0005739 | cellular_component | mitochondrion |
B | 0005759 | cellular_component | mitochondrial matrix |
B | 0006631 | biological_process | fatty acid metabolic process |
B | 0006974 | biological_process | DNA damage response |
B | 0010883 | biological_process | regulation of lipid storage |
B | 0012501 | biological_process | programmed cell death |
B | 0046872 | molecular_function | metal ion binding |
B | 0051213 | molecular_function | dioxygenase activity |
B | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
C | 0005515 | molecular_function | protein binding |
C | 0005739 | cellular_component | mitochondrion |
C | 0005759 | cellular_component | mitochondrial matrix |
C | 0006631 | biological_process | fatty acid metabolic process |
C | 0006974 | biological_process | DNA damage response |
C | 0010883 | biological_process | regulation of lipid storage |
C | 0012501 | biological_process | programmed cell death |
C | 0046872 | molecular_function | metal ion binding |
C | 0051213 | molecular_function | dioxygenase activity |
C | 1902445 | biological_process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN A 301 |
Chain | Residue |
A | HIS121 |
A | ASP123 |
A | HIS177 |
A | AKG302 |
site_id | AC2 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE AKG A 302 |
Chain | Residue |
A | HIS177 |
A | ARG197 |
A | SER199 |
A | ARG203 |
A | MN301 |
A | ILE70 |
A | HIS108 |
A | HIS121 |
A | ASP123 |
A | TYR165 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MN A 303 |
Chain | Residue |
A | GLU62 |
A | GLU75 |
B | HIS65 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MN A 304 |
Chain | Residue |
A | GLU189 |
B | GLU189 |
C | GLU189 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN B 301 |
Chain | Residue |
B | HIS121 |
B | ASP123 |
B | HIS177 |
B | AKG302 |
site_id | AC6 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE AKG B 302 |
Chain | Residue |
B | ILE70 |
B | HIS108 |
B | LEU110 |
B | HIS121 |
B | ASP123 |
B | MSE143 |
B | TYR165 |
B | HIS177 |
B | ARG197 |
B | SER199 |
B | ARG203 |
B | MN301 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MN B 303 |
Chain | Residue |
B | GLU62 |
B | GLU75 |
C | HIS65 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN C 301 |
Chain | Residue |
C | HIS121 |
C | ASP123 |
C | HIS177 |
C | AKG302 |
site_id | AC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE AKG C 302 |
Chain | Residue |
C | HIS108 |
C | LEU110 |
C | HIS121 |
C | ASP123 |
C | MSE143 |
C | TYR165 |
C | HIS177 |
C | ARG197 |
C | SER199 |
C | ARG203 |
C | MN301 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MN C 303 |
Chain | Residue |
A | HIS65 |
C | GLU62 |
C | GLU75 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000305|PubMed:25122757 |
Chain | Residue | Details |
A | HIS121 | |
A | ASP123 | |
A | HIS177 | |
B | HIS121 | |
B | ASP123 | |
B | HIS177 | |
C | HIS121 | |
C | ASP123 | |
C | HIS177 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: |
Chain | Residue | Details |
A | TYR165 | |
A | ARG203 | |
B | TYR165 | |
B | ARG203 | |
C | TYR165 | |
C | ARG203 |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25122757 |
Chain | Residue | Details |
A | ARG197 | |
B | ARG197 | |
C | ARG197 |