4PEH
Dbr1 in complex with synthetic linear RNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000375 | biological_process | RNA splicing, via transesterification reactions |
A | 0000398 | biological_process | mRNA splicing, via spliceosome |
A | 0003723 | molecular_function | RNA binding |
A | 0005506 | molecular_function | iron ion binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006397 | biological_process | mRNA processing |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0048471 | cellular_component | perinuclear region of cytoplasm |
B | 0000375 | biological_process | RNA splicing, via transesterification reactions |
B | 0000398 | biological_process | mRNA splicing, via spliceosome |
B | 0003723 | molecular_function | RNA binding |
B | 0005506 | molecular_function | iron ion binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0006397 | biological_process | mRNA processing |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0048471 | cellular_component | perinuclear region of cytoplasm |
C | 0000375 | biological_process | RNA splicing, via transesterification reactions |
C | 0000398 | biological_process | mRNA splicing, via spliceosome |
C | 0003723 | molecular_function | RNA binding |
C | 0005506 | molecular_function | iron ion binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006397 | biological_process | mRNA processing |
C | 0008270 | molecular_function | zinc ion binding |
C | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
C | 0016787 | molecular_function | hydrolase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0048471 | cellular_component | perinuclear region of cytoplasm |
D | 0000375 | biological_process | RNA splicing, via transesterification reactions |
D | 0000398 | biological_process | mRNA splicing, via spliceosome |
D | 0003723 | molecular_function | RNA binding |
D | 0005506 | molecular_function | iron ion binding |
D | 0005634 | cellular_component | nucleus |
D | 0005737 | cellular_component | cytoplasm |
D | 0006397 | biological_process | mRNA processing |
D | 0008270 | molecular_function | zinc ion binding |
D | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
D | 0016787 | molecular_function | hydrolase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0048471 | cellular_component | perinuclear region of cytoplasm |
E | 0000375 | biological_process | RNA splicing, via transesterification reactions |
E | 0000398 | biological_process | mRNA splicing, via spliceosome |
E | 0003723 | molecular_function | RNA binding |
E | 0005506 | molecular_function | iron ion binding |
E | 0005634 | cellular_component | nucleus |
E | 0005737 | cellular_component | cytoplasm |
E | 0006397 | biological_process | mRNA processing |
E | 0008270 | molecular_function | zinc ion binding |
E | 0008419 | molecular_function | RNA lariat debranching enzyme activity |
E | 0016787 | molecular_function | hydrolase activity |
E | 0030145 | molecular_function | manganese ion binding |
E | 0046872 | molecular_function | metal ion binding |
E | 0048471 | cellular_component | perinuclear region of cytoplasm |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue MN A 401 |
Chain | Residue |
A | ASP45 |
A | ASN90 |
A | HIS180 |
A | HIS230 |
V | A2P501 |
V | HOH701 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 402 |
Chain | Residue |
A | PRO146 |
A | HOH502 |
A | HOH508 |
A | HOH678 |
A | ARG50 |
A | ASN95 |
A | HIS99 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue GOL A 403 |
Chain | Residue |
A | GLN163 |
A | SER298 |
A | ILE299 |
A | SER300 |
A | HOH622 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue MN B 401 |
Chain | Residue |
B | ASP45 |
B | ASN90 |
B | HIS180 |
B | HIS230 |
W | A2P501 |
W | HOH701 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 402 |
Chain | Residue |
A | LYS320 |
B | TYR51 |
B | TYR74 |
B | HOH600 |
B | HOH656 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | ARG50 |
B | ASN95 |
B | HIS99 |
B | HOH536 |
B | HOH603 |
B | HOH619 |
B | HOH631 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue MN C 401 |
Chain | Residue |
C | ASP45 |
C | ASN90 |
C | HIS180 |
C | HIS230 |
C | HOH725 |
X | A2P501 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 402 |
Chain | Residue |
B | THR307 |
B | LYS308 |
C | LYS215 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue SO4 C 403 |
Chain | Residue |
C | ARG50 |
C | ASN95 |
C | HIS99 |
C | HOH501 |
C | HOH598 |
C | HOH689 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 404 |
Chain | Residue |
C | LYS18 |
C | TYR64 |
C | HOH710 |
X | A2P501 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue MN D 401 |
Chain | Residue |
D | ASP45 |
D | ASN90 |
D | HIS180 |
D | HIS230 |
D | HOH691 |
Y | A2P501 |
site_id | AD3 |
Number of Residues | 8 |
Details | binding site for residue SO4 D 402 |
Chain | Residue |
D | ARG50 |
D | ASN95 |
D | HIS99 |
D | PRO146 |
D | HOH509 |
D | HOH522 |
D | HOH583 |
D | HOH677 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue MN E 401 |
Chain | Residue |
E | ASP45 |
E | ASN90 |
E | HIS180 |
E | HIS230 |
Z | A2P501 |
Z | HOH703 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue SO4 E 402 |
Chain | Residue |
E | ARG50 |
E | ASN95 |
E | HIS99 |
E | HOH555 |
E | HOH584 |
E | HOH615 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | SER14 | |
E | HIS16 | |
A | HIS16 | |
B | SER14 | |
B | HIS16 | |
C | SER14 | |
C | HIS16 | |
D | SER14 | |
D | HIS16 | |
E | SER14 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0000269|PubMed:28504306, ECO:0007744|PDB:4PEF, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K73, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78, ECO:0007744|PDB:5UKI |
Chain | Residue | Details |
A | ASP45 | |
E | HIS180 | |
A | HIS180 | |
B | ASP45 | |
B | HIS180 | |
C | ASP45 | |
C | HIS180 | |
D | ASP45 | |
D | HIS180 | |
E | ASP45 |
site_id | SWS_FT_FI3 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | LYS59 | |
D | LYS59 | |
D | LYS134 | |
D | HIS156 | |
E | LYS59 | |
E | LYS134 | |
E | HIS156 | |
A | LYS134 | |
A | HIS156 | |
B | LYS59 | |
B | LYS134 | |
B | HIS156 | |
C | LYS59 | |
C | LYS134 | |
C | HIS156 |
site_id | SWS_FT_FI4 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|Ref.6, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:8DZK |
Chain | Residue | Details |
A | ASN90 | |
B | ASN90 | |
C | ASN90 | |
D | ASN90 | |
E | ASN90 |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | HIS91 | |
B | HIS91 | |
C | HIS91 | |
D | HIS91 | |
E | HIS91 |
site_id | SWS_FT_FI6 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | GLY201 | |
E | HIS232 | |
A | HIS232 | |
B | GLY201 | |
B | HIS232 | |
C | GLY201 | |
C | HIS232 | |
D | GLY201 | |
D | HIS232 | |
E | GLY201 |
site_id | SWS_FT_FI7 |
Number of Residues | 5 |
Details | BINDING: BINDING => ECO:0000269|PubMed:25123664, ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEH, ECO:0007744|PDB:4PEI, ECO:0007744|PDB:5K77, ECO:0007744|PDB:5K78 |
Chain | Residue | Details |
A | ASP205 | |
B | ASP205 | |
C | ASP205 | |
D | ASP205 | |
E | ASP205 |
site_id | SWS_FT_FI8 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:27930312, ECO:0007744|PDB:4PEG, ECO:0007744|PDB:4PEI |
Chain | Residue | Details |
A | HIS230 | |
E | MET231 | |
A | MET231 | |
B | HIS230 | |
B | MET231 | |
C | HIS230 | |
C | MET231 | |
D | HIS230 | |
D | MET231 | |
E | HIS230 |