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4P5E

CRYSTAL STRUCTURE OF HUMAN DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE-RIBOSIDE-MONOPHOSPHATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0009159biological_processdeoxyribonucleoside monophosphate catabolic process
A0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
B0009159biological_processdeoxyribonucleoside monophosphate catabolic process
B0070694molecular_functiondeoxyribonucleoside 5'-monophosphate N-glycosidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues19
Detailsbinding site for residue N6P A 201
ChainResidue
ACYS26
AILE76
AASP80
ASER98
AGLY100
AGLU104
AHOH309
AHOH323
AHOH421
BSER128
BMET130
AGLY27
ASER28
AILE29
AARG30
AGLY31
AHIS56
AVAL57
AGLU67

site_idAC2
Number of Residues16
Detailsbinding site for residue N6P B 201
ChainResidue
ASER128
AMET130
BCYS26
BGLY27
BSER28
BILE29
BARG30
BGLY31
BILE76
BASP80
BSER98
BGLY100
BGLU104
BHOH317
BHOH336
BHOH348

site_idAC3
Number of Residues5
Detailsbinding site for residue CA B 202
ChainResidue
BASP161
BPRO162
BGLU164
BHOH349
BHOH362

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4P5E
ChainResidueDetails
AGLY27
BARG30
BGLY31
BSER98
BGLY100
BGLU104
AILE29
AARG30
AGLY31
ASER98
AGLY100
AGLU104
BGLY27
BILE29

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: in other chain => ECO:0000269|PubMed:25108359, ECO:0007744|PDB:4P5E
ChainResidueDetails
ASER128
BSER128

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER28
BSER28

site_idSWS_FT_FI4
Number of Residues6
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569
ChainResidueDetails
ASER98
ASER128
ASER138
BSER98
BSER128
BSER138

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER123
BSER123

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PDB entries from 2024-11-13

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