4P5E
CRYSTAL STRUCTURE OF HUMAN DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE-RIBOSIDE-MONOPHOSPHATE
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-09-21 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.8103 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.974, 52.284, 54.454 |
Unit cell angles | 90.00, 104.77, 90.00 |
Refinement procedure
Resolution | 47.357 - 1.350 |
R-factor | 0.1563 |
Rwork | 0.155 |
R-free | 0.18040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fyi |
RMSD bond length | 0.009 |
RMSD bond angle | 1.311 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX ((phenix.refine: 1.8.4_1496)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.360 | 1.420 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.081 | 0.490 |
Number of reflections | 58489 | |
<I/σ(I)> | 9.5 | 2.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 4.5 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 20% PEG3K, 200 MM CALCIUM ACETATE, 100 MM TRIS, PH 7.0 |