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4P0V

Crystal structure of human farnesyl diphosphoate synthase in complex with zoledronate and taxodione

Functional Information from GO Data
ChainGOidnamespacecontents
A0004659molecular_functionprenyltransferase activity
A0008299biological_processisoprenoid biosynthetic process
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue ZOL A 401
ChainResidue
AASP103
AMG403
AMG404
AMG405
AHOH509
AHOH510
AHOH513
AHOH530
AASP107
AARG112
ALYS200
ATHR201
AGLN240
AASP243
ALYS257
A1WO402

site_idAC2
Number of Residues16
Detailsbinding site for residue 1WO A 402
ChainResidue
AGLY56
ALYS57
ATYR58
AARG60
AGLU93
AGLN96
AARG112
AARG113
APHE239
AASP243
ALYS257
ALYS353
AZOL401
AHOH514
AHOH517
AHOH531

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 403
ChainResidue
AASP103
AASP107
AZOL401
AMG405
AHOH530

site_idAC4
Number of Residues3
Detailsbinding site for residue MG A 404
ChainResidue
AASP243
AZOL401
AHOH509

site_idAC5
Number of Residues4
Detailsbinding site for residue MG A 405
ChainResidue
AASP103
AASP107
AZOL401
AMG403

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGefFQIqDDYlD
ChainResidueDetails
AMET235-ASP247

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DssltRRG
ChainResidueDetails
ALEU100-GLY114

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:16684881, ECO:0007744|PDB:1ZW5
ChainResidueDetails
ALYS57
AARG60
AGLN96
AASP103
AASP107
AARG113

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
AARG112
ALYS200
ATHR201
AGLN240
ALYS257

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS266

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for determining product chain length => ECO:0000250
ChainResidueDetails
APHE98
APHE99

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS57

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS287

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PDB entries from 2024-07-31

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