Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NUB

Crystal structure of Escherichia coli ribosomal oxygenase YcfD

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0008198molecular_functionferrous iron binding
A0016491molecular_functionoxidoreductase activity
A0016706molecular_function2-oxoglutarate-dependent dioxygenase activity
A0030961biological_processpeptidyl-arginine hydroxylation
A0042803molecular_functionprotein homodimerization activity
A0043687biological_processpost-translational protein modification
A0046872molecular_functionmetal ion binding
A0051213molecular_functiondioxygenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE A 401
ChainResidue
AHIS125
AASP127
AHIS187
AHOH508
AHOH513

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 402
ChainResidue
AGLU301
AGLU372
ALEU7
AASN8
APHE12
AHIS16

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24814345","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24530688","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon