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4NPL

Crystal structure of Zebrafish ALKBH5 in complex with alpha-ketoglutarate

Functional Information from GO Data
ChainGOidnamespacecontents
A0006397biological_processmRNA processing
A0035515molecular_functionoxidative RNA demethylase activity
A0035553biological_processobsolete oxidative single-stranded RNA demethylation
B0006397biological_processmRNA processing
B0035515molecular_functionoxidative RNA demethylase activity
B0035553biological_processobsolete oxidative single-stranded RNA demethylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 300
ChainResidue
AHIS135
AASP137
AHIS197
AAKG301
AHOH465

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AKG A 301
ChainResidue
AHIS197
AILE199
AARG208
AVAL210
AILE212
AMN300
AHOH465
AHOH553
AHOH574
AASN124
ATYR126
AILE132
AHIS135

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 300
ChainResidue
BHIS135
BASP137
BHIS197
BAKG301
BHOH437

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE AKG B 301
ChainResidue
BASN124
BTYR126
BILE132
BHIS135
BHIS197
BILE199
BARG208
BVAL210
BILE212
BMN300
BHOH426
BHOH437
BHOH482
BHOH499

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:Q6P6C2
ChainResidueDetails
ATYR70
BTYR70

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24561204, ECO:0007744|PDB:4NPL
ChainResidueDetails
AASN124
ATYR126
AARG208
BASN124
BTYR126
BARG208

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000305|PubMed:24561204
ChainResidueDetails
AHIS135
AASP137
AHIS197
BHIS135
BASP137
BHIS197

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PDB entries from 2024-06-26

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