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4N9F

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex

Functional Information from GO Data
ChainGOidnamespacecontents
00000122biological_processnegative regulation of transcription by RNA polymerase II
00000209biological_processprotein polyubiquitination
00001503biological_processossification
00001649biological_processosteoblast differentiation
00003677molecular_functionDNA binding
00003713molecular_functiontranscription coactivator activity
00005515molecular_functionprotein binding
00005634cellular_componentnucleus
00005654cellular_componentnucleoplasm
00006357biological_processregulation of transcription by RNA polymerase II
00006366biological_processtranscription by RNA polymerase II
00016020cellular_componentmembrane
00016513cellular_componentcore-binding factor complex
00030098biological_processlymphocyte differentiation
00030099biological_processmyeloid cell differentiation
00043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
00043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
00043565molecular_functionsequence-specific DNA binding
00045944biological_processpositive regulation of transcription by RNA polymerase II
00048469biological_processcell maturation
00060216biological_processdefinitive hemopoiesis
10003723molecular_functionRNA binding
10005515molecular_functionprotein binding
10016020cellular_componentmembrane
10019058biological_processviral life cycle
10020002cellular_componenthost cell plasma membrane
10030430cellular_componenthost cell cytoplasm
10044423cellular_componentvirion component
20003723molecular_functionRNA binding
20005515molecular_functionprotein binding
20016020cellular_componentmembrane
20019058biological_processviral life cycle
20020002cellular_componenthost cell plasma membrane
20030430cellular_componenthost cell cytoplasm
20044423cellular_componentvirion component
30006511biological_processubiquitin-dependent protein catabolic process
30031625molecular_functionubiquitin protein ligase binding
40006368biological_processtranscription elongation by RNA polymerase II
40030891cellular_componentVCB complex
40070449cellular_componentelongin complex
50006511biological_processubiquitin-dependent protein catabolic process
60000122biological_processnegative regulation of transcription by RNA polymerase II
60000209biological_processprotein polyubiquitination
60001503biological_processossification
60001649biological_processosteoblast differentiation
60003677molecular_functionDNA binding
60003713molecular_functiontranscription coactivator activity
60005515molecular_functionprotein binding
60005634cellular_componentnucleus
60005654cellular_componentnucleoplasm
60006357biological_processregulation of transcription by RNA polymerase II
60006366biological_processtranscription by RNA polymerase II
60016020cellular_componentmembrane
60016513cellular_componentcore-binding factor complex
60030098biological_processlymphocyte differentiation
60030099biological_processmyeloid cell differentiation
60043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
60043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
60043565molecular_functionsequence-specific DNA binding
60045944biological_processpositive regulation of transcription by RNA polymerase II
60048469biological_processcell maturation
60060216biological_processdefinitive hemopoiesis
70003723molecular_functionRNA binding
70005515molecular_functionprotein binding
70016020cellular_componentmembrane
70019058biological_processviral life cycle
70020002cellular_componenthost cell plasma membrane
70030430cellular_componenthost cell cytoplasm
70044423cellular_componentvirion component
90006511biological_processubiquitin-dependent protein catabolic process
90031625molecular_functionubiquitin protein ligase binding
a0000122biological_processnegative regulation of transcription by RNA polymerase II
a0000209biological_processprotein polyubiquitination
a0001503biological_processossification
a0001649biological_processosteoblast differentiation
a0003677molecular_functionDNA binding
a0003713molecular_functiontranscription coactivator activity
a0005515molecular_functionprotein binding
a0005634cellular_componentnucleus
a0005654cellular_componentnucleoplasm
a0006357biological_processregulation of transcription by RNA polymerase II
a0006366biological_processtranscription by RNA polymerase II
a0016020cellular_componentmembrane
a0016513cellular_componentcore-binding factor complex
a0030098biological_processlymphocyte differentiation
a0030099biological_processmyeloid cell differentiation
a0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
a0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
a0043565molecular_functionsequence-specific DNA binding
a0045944biological_processpositive regulation of transcription by RNA polymerase II
a0048469biological_processcell maturation
a0060216biological_processdefinitive hemopoiesis
b0003723molecular_functionRNA binding
b0005515molecular_functionprotein binding
b0016020cellular_componentmembrane
b0019058biological_processviral life cycle
b0020002cellular_componenthost cell plasma membrane
b0030430cellular_componenthost cell cytoplasm
b0044423cellular_componentvirion component
B0006511biological_processubiquitin-dependent protein catabolic process
c0000122biological_processnegative regulation of transcription by RNA polymerase II
c0000209biological_processprotein polyubiquitination
c0001503biological_processossification
c0001649biological_processosteoblast differentiation
c0003677molecular_functionDNA binding
c0003713molecular_functiontranscription coactivator activity
c0005515molecular_functionprotein binding
c0005634cellular_componentnucleus
c0005654cellular_componentnucleoplasm
c0006357biological_processregulation of transcription by RNA polymerase II
c0006366biological_processtranscription by RNA polymerase II
c0016020cellular_componentmembrane
c0016513cellular_componentcore-binding factor complex
c0030098biological_processlymphocyte differentiation
c0030099biological_processmyeloid cell differentiation
c0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
c0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
c0043565molecular_functionsequence-specific DNA binding
c0045944biological_processpositive regulation of transcription by RNA polymerase II
c0048469biological_processcell maturation
c0060216biological_processdefinitive hemopoiesis
C0006511biological_processubiquitin-dependent protein catabolic process
C0031625molecular_functionubiquitin protein ligase binding
d0003723molecular_functionRNA binding
d0005515molecular_functionprotein binding
d0016020cellular_componentmembrane
d0019058biological_processviral life cycle
d0020002cellular_componenthost cell plasma membrane
d0030430cellular_componenthost cell cytoplasm
d0044423cellular_componentvirion component
D0006368biological_processtranscription elongation by RNA polymerase II
D0030891cellular_componentVCB complex
D0070449cellular_componentelongin complex
e0006368biological_processtranscription elongation by RNA polymerase II
e0030891cellular_componentVCB complex
e0070449cellular_componentelongin complex
E0006511biological_processubiquitin-dependent protein catabolic process
f0006511biological_processubiquitin-dependent protein catabolic process
f0031625molecular_functionubiquitin protein ligase binding
F0000122biological_processnegative regulation of transcription by RNA polymerase II
F0000209biological_processprotein polyubiquitination
F0001503biological_processossification
F0001649biological_processosteoblast differentiation
F0003677molecular_functionDNA binding
F0003713molecular_functiontranscription coactivator activity
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0006357biological_processregulation of transcription by RNA polymerase II
F0006366biological_processtranscription by RNA polymerase II
F0016020cellular_componentmembrane
F0016513cellular_componentcore-binding factor complex
F0030098biological_processlymphocyte differentiation
F0030099biological_processmyeloid cell differentiation
F0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
F0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
F0043565molecular_functionsequence-specific DNA binding
F0045944biological_processpositive regulation of transcription by RNA polymerase II
F0048469biological_processcell maturation
F0060216biological_processdefinitive hemopoiesis
g0006368biological_processtranscription elongation by RNA polymerase II
g0030891cellular_componentVCB complex
g0070449cellular_componentelongin complex
G0003723molecular_functionRNA binding
G0005515molecular_functionprotein binding
G0016020cellular_componentmembrane
G0019058biological_processviral life cycle
G0020002cellular_componenthost cell plasma membrane
G0030430cellular_componenthost cell cytoplasm
G0044423cellular_componentvirion component
h0006511biological_processubiquitin-dependent protein catabolic process
H0006368biological_processtranscription elongation by RNA polymerase II
H0030891cellular_componentVCB complex
H0070449cellular_componentelongin complex
i0000122biological_processnegative regulation of transcription by RNA polymerase II
i0000209biological_processprotein polyubiquitination
i0001503biological_processossification
i0001649biological_processosteoblast differentiation
i0003677molecular_functionDNA binding
i0003713molecular_functiontranscription coactivator activity
i0005515molecular_functionprotein binding
i0005634cellular_componentnucleus
i0005654cellular_componentnucleoplasm
i0006357biological_processregulation of transcription by RNA polymerase II
i0006366biological_processtranscription by RNA polymerase II
i0016020cellular_componentmembrane
i0016513cellular_componentcore-binding factor complex
i0030098biological_processlymphocyte differentiation
i0030099biological_processmyeloid cell differentiation
i0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
i0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
i0043565molecular_functionsequence-specific DNA binding
i0045944biological_processpositive regulation of transcription by RNA polymerase II
i0048469biological_processcell maturation
i0060216biological_processdefinitive hemopoiesis
I0006511biological_processubiquitin-dependent protein catabolic process
I0031625molecular_functionubiquitin protein ligase binding
j0003723molecular_functionRNA binding
j0005515molecular_functionprotein binding
j0016020cellular_componentmembrane
j0019058biological_processviral life cycle
j0020002cellular_componenthost cell plasma membrane
j0030430cellular_componenthost cell cytoplasm
j0044423cellular_componentvirion component
J0006368biological_processtranscription elongation by RNA polymerase II
J0030891cellular_componentVCB complex
J0070449cellular_componentelongin complex
k0000122biological_processnegative regulation of transcription by RNA polymerase II
k0000209biological_processprotein polyubiquitination
k0001503biological_processossification
k0001649biological_processosteoblast differentiation
k0003677molecular_functionDNA binding
k0003713molecular_functiontranscription coactivator activity
k0005515molecular_functionprotein binding
k0005634cellular_componentnucleus
k0005654cellular_componentnucleoplasm
k0006357biological_processregulation of transcription by RNA polymerase II
k0006366biological_processtranscription by RNA polymerase II
k0016020cellular_componentmembrane
k0016513cellular_componentcore-binding factor complex
k0030098biological_processlymphocyte differentiation
k0030099biological_processmyeloid cell differentiation
k0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
k0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
k0043565molecular_functionsequence-specific DNA binding
k0045944biological_processpositive regulation of transcription by RNA polymerase II
k0048469biological_processcell maturation
k0060216biological_processdefinitive hemopoiesis
K0006511biological_processubiquitin-dependent protein catabolic process
l0006511biological_processubiquitin-dependent protein catabolic process
l0031625molecular_functionubiquitin protein ligase binding
L0000122biological_processnegative regulation of transcription by RNA polymerase II
L0000209biological_processprotein polyubiquitination
L0001503biological_processossification
L0001649biological_processosteoblast differentiation
L0003677molecular_functionDNA binding
L0003713molecular_functiontranscription coactivator activity
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0006357biological_processregulation of transcription by RNA polymerase II
L0006366biological_processtranscription by RNA polymerase II
L0016020cellular_componentmembrane
L0016513cellular_componentcore-binding factor complex
L0030098biological_processlymphocyte differentiation
L0030099biological_processmyeloid cell differentiation
L0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
L0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
L0043565molecular_functionsequence-specific DNA binding
L0045944biological_processpositive regulation of transcription by RNA polymerase II
L0048469biological_processcell maturation
L0060216biological_processdefinitive hemopoiesis
m0006368biological_processtranscription elongation by RNA polymerase II
m0030891cellular_componentVCB complex
m0070449cellular_componentelongin complex
M0003723molecular_functionRNA binding
M0005515molecular_functionprotein binding
M0016020cellular_componentmembrane
M0019058biological_processviral life cycle
M0020002cellular_componenthost cell plasma membrane
M0030430cellular_componenthost cell cytoplasm
M0044423cellular_componentvirion component
n0006511biological_processubiquitin-dependent protein catabolic process
N0000122biological_processnegative regulation of transcription by RNA polymerase II
N0000209biological_processprotein polyubiquitination
N0001503biological_processossification
N0001649biological_processosteoblast differentiation
N0003677molecular_functionDNA binding
N0003713molecular_functiontranscription coactivator activity
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0006357biological_processregulation of transcription by RNA polymerase II
N0006366biological_processtranscription by RNA polymerase II
N0016020cellular_componentmembrane
N0016513cellular_componentcore-binding factor complex
N0030098biological_processlymphocyte differentiation
N0030099biological_processmyeloid cell differentiation
N0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
N0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
N0043565molecular_functionsequence-specific DNA binding
N0045944biological_processpositive regulation of transcription by RNA polymerase II
N0048469biological_processcell maturation
N0060216biological_processdefinitive hemopoiesis
o0000122biological_processnegative regulation of transcription by RNA polymerase II
o0000209biological_processprotein polyubiquitination
o0001503biological_processossification
o0001649biological_processosteoblast differentiation
o0003677molecular_functionDNA binding
o0003713molecular_functiontranscription coactivator activity
o0005515molecular_functionprotein binding
o0005634cellular_componentnucleus
o0005654cellular_componentnucleoplasm
o0006357biological_processregulation of transcription by RNA polymerase II
o0006366biological_processtranscription by RNA polymerase II
o0016020cellular_componentmembrane
o0016513cellular_componentcore-binding factor complex
o0030098biological_processlymphocyte differentiation
o0030099biological_processmyeloid cell differentiation
o0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
o0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
o0043565molecular_functionsequence-specific DNA binding
o0045944biological_processpositive regulation of transcription by RNA polymerase II
o0048469biological_processcell maturation
o0060216biological_processdefinitive hemopoiesis
O0006511biological_processubiquitin-dependent protein catabolic process
O0031625molecular_functionubiquitin protein ligase binding
p0003723molecular_functionRNA binding
p0005515molecular_functionprotein binding
p0016020cellular_componentmembrane
p0019058biological_processviral life cycle
p0020002cellular_componenthost cell plasma membrane
p0030430cellular_componenthost cell cytoplasm
p0044423cellular_componentvirion component
P0006368biological_processtranscription elongation by RNA polymerase II
P0030891cellular_componentVCB complex
P0070449cellular_componentelongin complex
q0003723molecular_functionRNA binding
q0005515molecular_functionprotein binding
q0016020cellular_componentmembrane
q0019058biological_processviral life cycle
q0020002cellular_componenthost cell plasma membrane
q0030430cellular_componenthost cell cytoplasm
q0044423cellular_componentvirion component
Q0006511biological_processubiquitin-dependent protein catabolic process
r0006511biological_processubiquitin-dependent protein catabolic process
r0031625molecular_functionubiquitin protein ligase binding
R0000122biological_processnegative regulation of transcription by RNA polymerase II
R0000209biological_processprotein polyubiquitination
R0001503biological_processossification
R0001649biological_processosteoblast differentiation
R0003677molecular_functionDNA binding
R0003713molecular_functiontranscription coactivator activity
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0006357biological_processregulation of transcription by RNA polymerase II
R0006366biological_processtranscription by RNA polymerase II
R0016020cellular_componentmembrane
R0016513cellular_componentcore-binding factor complex
R0030098biological_processlymphocyte differentiation
R0030099biological_processmyeloid cell differentiation
R0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
R0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
R0043565molecular_functionsequence-specific DNA binding
R0045944biological_processpositive regulation of transcription by RNA polymerase II
R0048469biological_processcell maturation
R0060216biological_processdefinitive hemopoiesis
s0006368biological_processtranscription elongation by RNA polymerase II
s0030891cellular_componentVCB complex
s0070449cellular_componentelongin complex
S0003723molecular_functionRNA binding
S0005515molecular_functionprotein binding
S0016020cellular_componentmembrane
S0019058biological_processviral life cycle
S0020002cellular_componenthost cell plasma membrane
S0030430cellular_componenthost cell cytoplasm
S0044423cellular_componentvirion component
t0006511biological_processubiquitin-dependent protein catabolic process
T0006511biological_processubiquitin-dependent protein catabolic process
u0000122biological_processnegative regulation of transcription by RNA polymerase II
u0000209biological_processprotein polyubiquitination
u0001503biological_processossification
u0001649biological_processosteoblast differentiation
u0003677molecular_functionDNA binding
u0003713molecular_functiontranscription coactivator activity
u0005515molecular_functionprotein binding
u0005634cellular_componentnucleus
u0005654cellular_componentnucleoplasm
u0006357biological_processregulation of transcription by RNA polymerase II
u0006366biological_processtranscription by RNA polymerase II
u0016020cellular_componentmembrane
u0016513cellular_componentcore-binding factor complex
u0030098biological_processlymphocyte differentiation
u0030099biological_processmyeloid cell differentiation
u0043371biological_processnegative regulation of CD4-positive, alpha-beta T cell differentiation
u0043378biological_processpositive regulation of CD8-positive, alpha-beta T cell differentiation
u0043565molecular_functionsequence-specific DNA binding
u0045944biological_processpositive regulation of transcription by RNA polymerase II
u0048469biological_processcell maturation
u0060216biological_processdefinitive hemopoiesis
U0006511biological_processubiquitin-dependent protein catabolic process
U0031625molecular_functionubiquitin protein ligase binding
v0003723molecular_functionRNA binding
v0005515molecular_functionprotein binding
v0016020cellular_componentmembrane
v0019058biological_processviral life cycle
v0020002cellular_componenthost cell plasma membrane
v0030430cellular_componenthost cell cytoplasm
v0044423cellular_componentvirion component
V0006511biological_processubiquitin-dependent protein catabolic process
V0031625molecular_functionubiquitin protein ligase binding
w0006511biological_processubiquitin-dependent protein catabolic process
w0031625molecular_functionubiquitin protein ligase binding
W0006368biological_processtranscription elongation by RNA polymerase II
W0030891cellular_componentVCB complex
W0070449cellular_componentelongin complex
x0006511biological_processubiquitin-dependent protein catabolic process
x0031625molecular_functionubiquitin protein ligase binding
X0006368biological_processtranscription elongation by RNA polymerase II
X0030891cellular_componentVCB complex
X0070449cellular_componentelongin complex
y0006368biological_processtranscription elongation by RNA polymerase II
y0030891cellular_componentVCB complex
y0070449cellular_componentelongin complex
Y0006511biological_processubiquitin-dependent protein catabolic process
z0006511biological_processubiquitin-dependent protein catabolic process
Z0006511biological_processubiquitin-dependent protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN b 201
ChainResidue
bHIS108
bCYS114
bCYS133
bGLU134
bHIS139

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN G 201
ChainResidue
GHIS139
GHIS108
GCYS114
GCYS133
GGLU134

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN M 201
ChainResidue
MHIS108
MCYS114
MCYS133
MHIS139

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN S 201
ChainResidue
SHIS108
SCYS114
SCYS133
SGLU134
SHIS139

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN d 201
ChainResidue
dHIS108
dCYS114
dCYS133
dHIS139

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN j 201
ChainResidue
jHIS108
jCYS114
jCYS133
jGLU134
jHIS139

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN p 201
ChainResidue
pHIS108
pCYS114
pCYS133
pHIS139

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN v 201
ChainResidue
vHIS108
vCYS114
vCYS133
vHIS139

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN 1 201
ChainResidue
1HIS108
1CYS114
1CYS133
1GLU134
1HIS139

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN 7 201
ChainResidue
7HIS108
7CYS114
7CYS133
7GLU134
7HIS139

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN q 201
ChainResidue
qHIS108
qCYS114
qCYS133
qHIS139

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN 2 201
ChainResidue
2HIS108
2CYS114
2CYS133
2HIS139

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues48
DetailsBINDING: BINDING => ECO:0000269|PubMed:24402281, ECO:0000269|PubMed:37640699, ECO:0007744|PDB:4N9F, ECO:0007744|PDB:8FVI
ChainResidueDetails
bHIS108
MCYS114
MCYS133
MHIS139
SHIS108
SCYS114
SCYS133
SHIS139
dHIS108
dCYS114
dCYS133
bCYS114
dHIS139
jHIS108
jCYS114
jCYS133
jHIS139
pHIS108
pCYS114
pCYS133
pHIS139
vHIS108
bCYS133
vCYS114
vCYS133
vHIS139
1HIS108
1CYS114
1CYS133
1HIS139
7HIS108
7CYS114
7CYS133
bHIS139
7HIS139
qHIS108
qCYS114
qCYS133
qHIS139
2HIS108
2CYS114
2CYS133
2HIS139
GHIS108
GCYS114
GCYS133
GHIS139
MHIS108

site_idSWS_FT_FI2
Number of Residues12
DetailsSITE: Cleavage in virion (by viral protease) => ECO:0000255|HAMAP-Rule:MF_04081, ECO:0000269|PubMed:12186895
ChainResidueDetails
bLEU150
7LEU150
qLEU150
2LEU151
GLEU150
MLEU150
SLEU151
dLEU150
jLEU150
pLEU150
vLEU151
1LEU151

site_idSWS_FT_FI3
Number of Residues12
DetailsMOD_RES: Phosphothreonine; by host MAP4K1 => ECO:0000255|HAMAP-Rule:MF_04081
ChainResidueDetails
bTHR96
7THR96
qTHR96
2THR96
GTHR96
MTHR96
STHR96
dTHR96
jTHR96
pTHR96
vTHR96
1THR96

site_idSWS_FT_FI4
Number of Residues12
DetailsMOD_RES: Phosphoserine; by host => ECO:0000255|HAMAP-Rule:MF_04081
ChainResidueDetails
bSER144
7SER144
qSER144
2SER145
GSER144
MSER144
SSER145
dSER144
jSER144
pSER144
vSER145
1SER145

site_idSWS_FT_FI5
Number of Residues12
DetailsMOD_RES: Phosphoserine; by host MAP4K1 => ECO:0000255|HAMAP-Rule:MF_04081
ChainResidueDetails
bSER165
7SER165
qSER165
2SER166
GSER165
MSER165
SSER166
dSER165
jSER165
pSER165
vSER166
1SER166

225158

PDB entries from 2024-09-18

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