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4MSQ

Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 catalytic domain bound to ubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0016579biological_processprotein deubiquitination
A0061578molecular_functionK63-linked deubiquitinase activity
A0070536biological_processprotein K63-linked deubiquitination
A0140492molecular_functionmetal-dependent deubiquitinase activity
C0008233molecular_functionpeptidase activity
C0008237molecular_functionmetallopeptidase activity
C0016579biological_processprotein deubiquitination
C0061578molecular_functionK63-linked deubiquitinase activity
C0070536biological_processprotein K63-linked deubiquitination
C0140492molecular_functionmetal-dependent deubiquitinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS356
ACYS397
AHIS404
AHIS406

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS341
AHIS343
AASP354
BGLY76

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 503
ChainResidue
AGLN346
APHE349
AHOH684
BGLY76
AASP315

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 504
ChainResidue
AILE290
ALEU325
AGLN329
ATHR336
ATYR361
BLEU8
BLEU71
BEDO101

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 505
ChainResidue
ATHR281
ALYS282
AHOH617

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 506
ChainResidue
ALYS258
AGLN362
APRO366
AASP387
AHOH693

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 507
ChainResidue
APRO388
AGLN392

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 101
ChainResidue
AEDO504
BTHR7
BLEU8
BLEU69
BVAL70
BLEU71

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 102
ChainResidue
BILE44
BALA46
BGLY47
BHIS68

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 501
ChainResidue
CHIS356
CCYS397
CHIS404
CHIS406

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 502
ChainResidue
CHIS341
CHIS343
CASP354
DGLY76

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 C 503
ChainResidue
CLYS409
CTHR412
CMET413

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 504
ChainResidue
CILE382
CGLN416
CGLU422
CHOH635

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C 505
ChainResidue
ATHR313
AASP315
CGLU311
CTHR316
CCYS317
CGLY318
CHOH642
DARG74
DHOH203

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 506
ChainResidue
CLEU325
CGLN329
CTHR336
CTYR361
DLEU8
DLEU71
DEDO101

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 507
ChainResidue
CASP315
CGLN346
CPHE349
DGLY76

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 101
ChainResidue
CEDO506
DTHR7
DLEU8
DLEU69
DVAL70
DLEU71

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 102
ChainResidue
CPHE326
CASP330
DLYS6
DTHR7
DLEU8
DHIS68

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01182
ChainResidueDetails
AHIS341
AHIS343
AASP354
CHIS341
CHIS343
CASP354

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AHIS356
ACYS397
AHIS404
AHIS406
CHIS356
CCYS397
CHIS404
CHIS406

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Indirect zinc-binding => ECO:0000250
ChainResidueDetails
AGLU286
CGLU286

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PDB entries from 2024-07-24

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