4M7D

Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000398	biological_process	mRNA splicing, via spliceosome
A	0003723	molecular_function	RNA binding
A	0005688	cellular_component	U6 snRNP
A	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
B	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
B	0000398	biological_process	mRNA splicing, via spliceosome
B	0000932	cellular_component	P-body
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005681	cellular_component	spliceosomal complex
B	0005688	cellular_component	U6 snRNP
B	0005730	cellular_component	nucleolus
B	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
B	0005737	cellular_component	cytoplasm
B	0006364	biological_process	rRNA processing
B	0006397	biological_process	mRNA processing
B	0008033	biological_process	tRNA processing
B	0008380	biological_process	RNA splicing
B	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
B	0071001	cellular_component	U4/U6 snRNP
B	0071011	cellular_component	precatalytic spliceosome
B	0071013	cellular_component	catalytic step 2 spliceosome
B	1990726	cellular_component	Lsm1-7-Pat1 complex
B	1990904	cellular_component	ribonucleoprotein complex
C	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
C	0000398	biological_process	mRNA splicing, via spliceosome
C	0000932	cellular_component	P-body
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005681	cellular_component	spliceosomal complex
C	0005688	cellular_component	U6 snRNP
C	0005730	cellular_component	nucleolus
C	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
C	0005737	cellular_component	cytoplasm
C	0006364	biological_process	rRNA processing
C	0006397	biological_process	mRNA processing
C	0008033	biological_process	tRNA processing
C	0008380	biological_process	RNA splicing
C	0033962	biological_process	P-body assembly
C	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
C	0071001	cellular_component	U4/U6 snRNP
C	0071011	cellular_component	precatalytic spliceosome
C	0071013	cellular_component	catalytic step 2 spliceosome
C	0120114	cellular_component	Sm-like protein family complex
C	1990726	cellular_component	Lsm1-7-Pat1 complex
C	1990904	cellular_component	ribonucleoprotein complex
D	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
D	0000398	biological_process	mRNA splicing, via spliceosome
D	0000932	cellular_component	P-body
D	0003723	molecular_function	RNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005681	cellular_component	spliceosomal complex
D	0005688	cellular_component	U6 snRNP
D	0005730	cellular_component	nucleolus
D	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
D	0005737	cellular_component	cytoplasm
D	0006364	biological_process	rRNA processing
D	0006397	biological_process	mRNA processing
D	0008033	biological_process	tRNA processing
D	0008380	biological_process	RNA splicing
D	0030490	biological_process	maturation of SSU-rRNA
D	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
D	0071001	cellular_component	U4/U6 snRNP
D	0120114	cellular_component	Sm-like protein family complex
D	1990726	cellular_component	Lsm1-7-Pat1 complex
D	1990904	cellular_component	ribonucleoprotein complex
E	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
E	0000398	biological_process	mRNA splicing, via spliceosome
E	0000932	cellular_component	P-body
E	0000956	biological_process	nuclear-transcribed mRNA catabolic process
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005681	cellular_component	spliceosomal complex
E	0005688	cellular_component	U6 snRNP
E	0005730	cellular_component	nucleolus
E	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
E	0005737	cellular_component	cytoplasm
E	0006364	biological_process	rRNA processing
E	0006397	biological_process	mRNA processing
E	0008033	biological_process	tRNA processing
E	0008380	biological_process	RNA splicing
E	0022613	biological_process	ribonucleoprotein complex biogenesis
E	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
E	0071001	cellular_component	U4/U6 snRNP
E	1990726	cellular_component	Lsm1-7-Pat1 complex
E	1990904	cellular_component	ribonucleoprotein complex
F	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
F	0000398	biological_process	mRNA splicing, via spliceosome
F	0000932	cellular_component	P-body
F	0000956	biological_process	nuclear-transcribed mRNA catabolic process
F	0003723	molecular_function	RNA binding
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005681	cellular_component	spliceosomal complex
F	0005688	cellular_component	U6 snRNP
F	0005730	cellular_component	nucleolus
F	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
F	0005737	cellular_component	cytoplasm
F	0006364	biological_process	rRNA processing
F	0006397	biological_process	mRNA processing
F	0008033	biological_process	tRNA processing
F	0008380	biological_process	RNA splicing
F	0030490	biological_process	maturation of SSU-rRNA
F	0032991	cellular_component	protein-containing complex
F	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
F	0071001	cellular_component	U4/U6 snRNP
F	0071004	cellular_component	U2-type prespliceosome
F	0071013	cellular_component	catalytic step 2 spliceosome
F	0097526	cellular_component	spliceosomal tri-snRNP complex
F	1990726	cellular_component	Lsm1-7-Pat1 complex
F	1990904	cellular_component	ribonucleoprotein complex
G	0000398	biological_process	mRNA splicing, via spliceosome
G	0000956	biological_process	nuclear-transcribed mRNA catabolic process
G	0003723	molecular_function	RNA binding
G	0006396	biological_process	RNA processing
H	0000398	biological_process	mRNA splicing, via spliceosome
H	0003723	molecular_function	RNA binding
H	0005688	cellular_component	U6 snRNP
H	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
I	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
I	0000398	biological_process	mRNA splicing, via spliceosome
I	0000932	cellular_component	P-body
I	0003723	molecular_function	RNA binding
I	0005515	molecular_function	protein binding
I	0005634	cellular_component	nucleus
I	0005681	cellular_component	spliceosomal complex
I	0005688	cellular_component	U6 snRNP
I	0005730	cellular_component	nucleolus
I	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
I	0005737	cellular_component	cytoplasm
I	0006364	biological_process	rRNA processing
I	0006397	biological_process	mRNA processing
I	0008033	biological_process	tRNA processing
I	0008380	biological_process	RNA splicing
I	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
I	0071001	cellular_component	U4/U6 snRNP
I	0071011	cellular_component	precatalytic spliceosome
I	0071013	cellular_component	catalytic step 2 spliceosome
I	1990726	cellular_component	Lsm1-7-Pat1 complex
I	1990904	cellular_component	ribonucleoprotein complex
J	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
J	0000398	biological_process	mRNA splicing, via spliceosome
J	0000932	cellular_component	P-body
J	0003723	molecular_function	RNA binding
J	0005515	molecular_function	protein binding
J	0005634	cellular_component	nucleus
J	0005681	cellular_component	spliceosomal complex
J	0005688	cellular_component	U6 snRNP
J	0005730	cellular_component	nucleolus
J	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
J	0005737	cellular_component	cytoplasm
J	0006364	biological_process	rRNA processing
J	0006397	biological_process	mRNA processing
J	0008033	biological_process	tRNA processing
J	0008380	biological_process	RNA splicing
J	0033962	biological_process	P-body assembly
J	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
J	0071001	cellular_component	U4/U6 snRNP
J	0071011	cellular_component	precatalytic spliceosome
J	0071013	cellular_component	catalytic step 2 spliceosome
J	0120114	cellular_component	Sm-like protein family complex
J	1990726	cellular_component	Lsm1-7-Pat1 complex
J	1990904	cellular_component	ribonucleoprotein complex
K	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
K	0000398	biological_process	mRNA splicing, via spliceosome
K	0000932	cellular_component	P-body
K	0003723	molecular_function	RNA binding
K	0005515	molecular_function	protein binding
K	0005634	cellular_component	nucleus
K	0005681	cellular_component	spliceosomal complex
K	0005688	cellular_component	U6 snRNP
K	0005730	cellular_component	nucleolus
K	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
K	0005737	cellular_component	cytoplasm
K	0006364	biological_process	rRNA processing
K	0006397	biological_process	mRNA processing
K	0008033	biological_process	tRNA processing
K	0008380	biological_process	RNA splicing
K	0030490	biological_process	maturation of SSU-rRNA
K	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
K	0071001	cellular_component	U4/U6 snRNP
K	0120114	cellular_component	Sm-like protein family complex
K	1990726	cellular_component	Lsm1-7-Pat1 complex
K	1990904	cellular_component	ribonucleoprotein complex
L	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
L	0000398	biological_process	mRNA splicing, via spliceosome
L	0000932	cellular_component	P-body
L	0000956	biological_process	nuclear-transcribed mRNA catabolic process
L	0003723	molecular_function	RNA binding
L	0005515	molecular_function	protein binding
L	0005634	cellular_component	nucleus
L	0005681	cellular_component	spliceosomal complex
L	0005688	cellular_component	U6 snRNP
L	0005730	cellular_component	nucleolus
L	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
L	0005737	cellular_component	cytoplasm
L	0006364	biological_process	rRNA processing
L	0006397	biological_process	mRNA processing
L	0008033	biological_process	tRNA processing
L	0008380	biological_process	RNA splicing
L	0022613	biological_process	ribonucleoprotein complex biogenesis
L	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
L	0071001	cellular_component	U4/U6 snRNP
L	1990726	cellular_component	Lsm1-7-Pat1 complex
L	1990904	cellular_component	ribonucleoprotein complex
M	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
M	0000398	biological_process	mRNA splicing, via spliceosome
M	0000932	cellular_component	P-body
M	0000956	biological_process	nuclear-transcribed mRNA catabolic process
M	0003723	molecular_function	RNA binding
M	0005515	molecular_function	protein binding
M	0005634	cellular_component	nucleus
M	0005681	cellular_component	spliceosomal complex
M	0005688	cellular_component	U6 snRNP
M	0005730	cellular_component	nucleolus
M	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
M	0005737	cellular_component	cytoplasm
M	0006364	biological_process	rRNA processing
M	0006397	biological_process	mRNA processing
M	0008033	biological_process	tRNA processing
M	0008380	biological_process	RNA splicing
M	0030490	biological_process	maturation of SSU-rRNA
M	0032991	cellular_component	protein-containing complex
M	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
M	0071001	cellular_component	U4/U6 snRNP
M	0071004	cellular_component	U2-type prespliceosome
M	0071013	cellular_component	catalytic step 2 spliceosome
M	0097526	cellular_component	spliceosomal tri-snRNP complex
M	1990726	cellular_component	Lsm1-7-Pat1 complex
M	1990904	cellular_component	ribonucleoprotein complex
N	0000398	biological_process	mRNA splicing, via spliceosome
N	0000956	biological_process	nuclear-transcribed mRNA catabolic process
N	0003723	molecular_function	RNA binding
N	0006396	biological_process	RNA processing

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	74
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

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