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4M52

Structure of Mtb Lpd bound to SL827

Functional Information from GO Data
ChainGOidnamespacecontents
A0004148molecular_functiondihydrolipoyl dehydrogenase activity
A0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0015036molecular_functiondisulfide oxidoreductase activity
A0016209molecular_functionantioxidant activity
A0016491molecular_functionoxidoreductase activity
A0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
A0016668molecular_functionoxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
A0035375molecular_functionzymogen binding
A0045254cellular_componentpyruvate dehydrogenase complex
A0045454biological_processcell redox homeostasis
A0050660molecular_functionflavin adenine dinucleotide binding
A0070404molecular_functionNADH binding
A0098869biological_processcellular oxidant detoxification
B0004148molecular_functiondihydrolipoyl dehydrogenase activity
B0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0015036molecular_functiondisulfide oxidoreductase activity
B0016209molecular_functionantioxidant activity
B0016491molecular_functionoxidoreductase activity
B0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
B0016668molecular_functionoxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
B0035375molecular_functionzymogen binding
B0045254cellular_componentpyruvate dehydrogenase complex
B0045454biological_processcell redox homeostasis
B0050660molecular_functionflavin adenine dinucleotide binding
B0070404molecular_functionNADH binding
B0098869biological_processcellular oxidant detoxification
C0004148molecular_functiondihydrolipoyl dehydrogenase activity
C0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
C0005515molecular_functionprotein binding
C0005576cellular_componentextracellular region
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005886cellular_componentplasma membrane
C0015036molecular_functiondisulfide oxidoreductase activity
C0016209molecular_functionantioxidant activity
C0016491molecular_functionoxidoreductase activity
C0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
C0016668molecular_functionoxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
C0035375molecular_functionzymogen binding
C0045254cellular_componentpyruvate dehydrogenase complex
C0045454biological_processcell redox homeostasis
C0050660molecular_functionflavin adenine dinucleotide binding
C0070404molecular_functionNADH binding
C0098869biological_processcellular oxidant detoxification
D0004148molecular_functiondihydrolipoyl dehydrogenase activity
D0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0015036molecular_functiondisulfide oxidoreductase activity
D0016209molecular_functionantioxidant activity
D0016491molecular_functionoxidoreductase activity
D0016655molecular_functionoxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
D0016668molecular_functionoxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
D0035375molecular_functionzymogen binding
D0045254cellular_componentpyruvate dehydrogenase complex
D0045454biological_processcell redox homeostasis
D0050660molecular_functionflavin adenine dinucleotide binding
D0070404molecular_functionNADH binding
D0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues36
DetailsBINDING SITE FOR RESIDUE FAD A 501
ChainResidue
ALEU9
AGLY39
AVAL40
ACYS41
AGLY45
ACYS46
ALYS50
ATYR112
AGLY113
AALA141
ATHR142
AGLY10
AGLY143
ATYR161
AILE182
APHE186
ATYR276
AGLY308
AASP309
AGLN315
ALEU316
AALA317
AGLY12
AHOH601
AHOH603
AHOH623
AHOH652
AHOH659
DHIS443
DPRO444
APRO13
AGLY14
AVAL32
AGLU33
APRO34
ATYR36

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE M52 A 502
ChainResidue
APRO13
ATYR16
AARG93
AGLY96
APHE99
AGLU321
DALA381
DALA383
DHIS443
DGLU448
DASN463
DPHE464

site_idAC3
Number of Residues35
DetailsBINDING SITE FOR RESIDUE FAD B 501
ChainResidue
BLEU9
BGLY10
BGLY12
BPRO13
BGLY14
BVAL32
BGLU33
BPRO34
BTYR36
BGLY39
BVAL40
BCYS41
BGLY45
BCYS46
BSER49
BLYS50
BTYR112
BGLY113
BALA141
BTHR142
BGLY143
BTYR161
BILE182
BTYR276
BGLY308
BASP309
BGLN315
BLEU316
BALA317
BHIS318
BHOH601
BHOH607
BHOH620
CHIS443
CPRO444

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE M52 B 502
ChainResidue
BPRO13
BTYR16
BARG93
BGLY96
BPHE99
BGLU321
CALA381
CALA383
CHIS443
CGLU448
CASN463

site_idAC5
Number of Residues34
DetailsBINDING SITE FOR RESIDUE FAD C 501
ChainResidue
CPRO13
CGLY14
CVAL32
CGLU33
CPRO34
CTYR36
CVAL40
CCYS41
CGLY45
CCYS46
CLYS50
CTYR112
CGLY113
CALA141
CTHR142
CGLY143
CTYR161
CILE182
CPHE269
CTYR276
CGLY308
CASP309
CGLN315
CLEU316
CALA317
CHIS318
CHOH601
CHOH617
CHOH712
BHIS443
BPRO444
CLEU9
CGLY10
CGLY12

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE M52 C 502
ChainResidue
BALA381
BALA383
BHIS443
BGLU448
BASN463
BHOH602
CPRO13
CTYR16
CLEU42
CARG93
CGLY96
CPHE99
CGLU321

site_idAC7
Number of Residues37
DetailsBINDING SITE FOR RESIDUE FAD D 501
ChainResidue
AHIS443
APRO444
DLEU9
DGLY10
DGLY12
DPRO13
DGLY14
DVAL32
DGLU33
DPRO34
DLYS35
DTYR36
DGLY39
DVAL40
DCYS41
DGLY45
DCYS46
DLYS50
DTYR112
DGLY113
DALA141
DTHR142
DGLY143
DTYR161
DILE182
DTYR276
DGLY308
DASP309
DGLN315
DLEU316
DALA317
DHIS318
DHOH602
DHOH621
DHOH643
DHOH647
DHOH651

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE M52 D 502
ChainResidue
AALA381
AALA383
AHIS443
AGLU448
AASN463
DPRO13
DTYR16
DARG93
DGLU321

Functional Information from PROSITE/UniProt
site_idPS00076
Number of Residues11
DetailsPYRIDINE_REDOX_1 Pyridine nucleotide-disulphide oxidoreductases class-I active site. GGvCLnvGCIP
ChainResidueDetails
AGLY38-PRO48

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
AHIS443
BHIS443
CHIS443
DHIS443

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:16093239, ECO:0000269|PubMed:20078138
ChainResidueDetails
AGLU33
CLYS50
CASP309
CALA317
DGLU33
DLYS50
DASP309
DALA317
ALYS50
AASP309
AALA317
BGLU33
BLYS50
BASP309
BALA317
CGLU33

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY113
CGLY178
CGLU201
CALA266
DGLY113
DGLY178
DGLU201
DALA266
AGLY178
AGLU201
AALA266
BGLY113
BGLY178
BGLU201
BALA266
CGLY113

223790

PDB entries from 2024-08-14

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