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4M0W

Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008234molecular_functioncysteine-type peptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
ACYS190
ACYS193
ACYS225
ACYS227

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 402
ChainResidue
ASER112
ASER115
ASER116
ATYR274
AHOH702

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE NHE A 403
ChainResidue
ALYS106
ATRP107
AASP287
AGLY288
AALA289
AHIS290
ATHR313
AILE315
AHOH520
AHOH561
AHOH742

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NHE A 404
ChainResidue
AGLN123
ALEU124
AGLU125
AARG141
AHOH703

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
AHIS18
AGLN20
AASP62
ATHR64
ALEU65
AHOH639

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 406
ChainResidue
ATYR252
ALYS253
ALEU254
AGLN255
ATHR258
ATYR306

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 101
ChainResidue
BGLU24
BASN25
BALA28

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
BARG54
BARG72

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Essential for function
ChainResidueDetails
BHIS68

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BSER65
AASP287

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BGLY76
ACYS193
ACYS225
ACYS227

site_idSWS_FT_FI5
Number of Residues7
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62979
ChainResidueDetails
BLYS6
BLYS11
BLYS27
BLYS29
BLYS33
BLYS48
BLYS63

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
BGLY76

218853

PDB entries from 2024-04-24

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