4KYO
Alanine-glyoxylate aminotransferase variant K390A in complex with the TPR domain of human Pex5p
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004760 | molecular_function | serine-pyruvate transaminase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005777 | cellular_component | peroxisome |
A | 0005782 | cellular_component | peroxisomal matrix |
A | 0005829 | cellular_component | cytosol |
A | 0006563 | biological_process | L-serine metabolic process |
A | 0007219 | biological_process | Notch signaling pathway |
A | 0008453 | molecular_function | alanine-glyoxylate transaminase activity |
A | 0008483 | molecular_function | transaminase activity |
A | 0009436 | biological_process | glyoxylate catabolic process |
A | 0016597 | molecular_function | amino acid binding |
A | 0019265 | biological_process | glycine biosynthetic process, by transamination of glyoxylate |
A | 0019448 | biological_process | L-cysteine catabolic process |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0042802 | molecular_function | identical protein binding |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0042853 | biological_process | L-alanine catabolic process |
A | 0043231 | cellular_component | intracellular membrane-bounded organelle |
A | 0046487 | biological_process | glyoxylate metabolic process |
A | 0046724 | biological_process | oxalic acid secretion |
C | 0004760 | molecular_function | serine-pyruvate transaminase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005777 | cellular_component | peroxisome |
C | 0005782 | cellular_component | peroxisomal matrix |
C | 0005829 | cellular_component | cytosol |
C | 0006563 | biological_process | L-serine metabolic process |
C | 0007219 | biological_process | Notch signaling pathway |
C | 0008453 | molecular_function | alanine-glyoxylate transaminase activity |
C | 0008483 | molecular_function | transaminase activity |
C | 0009436 | biological_process | glyoxylate catabolic process |
C | 0016597 | molecular_function | amino acid binding |
C | 0019265 | biological_process | glycine biosynthetic process, by transamination of glyoxylate |
C | 0019448 | biological_process | L-cysteine catabolic process |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0042802 | molecular_function | identical protein binding |
C | 0042803 | molecular_function | protein homodimerization activity |
C | 0042853 | biological_process | L-alanine catabolic process |
C | 0043231 | cellular_component | intracellular membrane-bounded organelle |
C | 0046487 | biological_process | glyoxylate metabolic process |
C | 0046724 | biological_process | oxalic acid secretion |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 A 401 |
Chain | Residue |
A | TYR260 |
A | THR263 |
A | HOH629 |
A | HOH710 |
C | SER81 |
C | GLY82 |
C | HIS83 |
C | GLN208 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 402 |
Chain | Residue |
A | GLY82 |
A | HIS83 |
A | GLN208 |
C | TYR260 |
C | THR263 |
A | SER81 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE BTB A 403 |
Chain | Residue |
A | LYS245 |
A | TRP246 |
A | ASN249 |
A | ASP254 |
A | GLN256 |
A | MET259 |
A | HOH528 |
A | HOH566 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BME A 404 |
Chain | Residue |
A | HIS155 |
A | GLN164 |
A | LEU166 |
A | PRO192 |
A | GLN198 |
A | HOH516 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BME A 405 |
Chain | Residue |
A | MET348 |
A | GLY349 |
A | GLY350 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BME A 406 |
Chain | Residue |
A | TYR297 |
C | ASP167 |
C | GLY168 |
C | HOH558 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BME A 407 |
Chain | Residue |
A | PRO125 |
A | MET126 |
A | THR127 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BME A 408 |
Chain | Residue |
A | PRO265 |
A | VAL266 |
A | ILE267 |
A | SER268 |
C | PRO214 |
C | PRO215 |
C | SER268 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BTB C 401 |
Chain | Residue |
C | LYS245 |
C | TRP246 |
C | ASN249 |
C | ASP254 |
C | GLN256 |
C | MET259 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE BME C 402 |
Chain | Residue |
C | VAL77 |
C | ILE78 |
C | SER79 |
C | TYR241 |
C | LEU247 |
C | TRP251 |
C | HIS262 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BME C 403 |
Chain | Residue |
C | LYS147 |
C | PRO148 |
C | LYS177 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BME C 404 |
Chain | Residue |
A | SER19 |
C | ASP52 |
C | GLU59 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BME C 405 |
Chain | Residue |
A | ASP52 |
A | GLN55 |
C | SER19 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE BME C 406 |
Chain | Residue |
C | TRP332 |
C | MET348 |
C | GLY349 |
C | GLY350 |
C | ARG360 |
C | HOH618 |
site_id | BC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE BME B 701 |
Chain | Residue |
B | ASN520 |
B | TYR522 |
B | LEU551 |
B | GLN552 |
B | HOH847 |
D | GLN347 |
D | LEU551 |
D | GLN552 |
site_id | BC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BME D 701 |
Chain | Residue |
D | LYS527 |
D | HOH847 |
Functional Information from PROSITE/UniProt
site_id | PS00595 |
Number of Residues | 21 |
Details | AA_TRANSFER_CLASS_5 Aminotransferases class-V pyridoxal-phosphate attachment site. IDILysGSQKalnappGtSlI |
Chain | Residue | Details |
A | ILE200-ILE220 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:28724525 |
Chain | Residue | Details |
B | LYS472 | |
D | LYS472 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:24662292 |
Chain | Residue | Details |
A | THR9 | |
B | LYS527 | |
D | LYS527 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine |
Chain | Residue | Details |
A | LYS209 | |
C | LYS209 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:O35423 |
Chain | Residue | Details |
A | LYS225 | |
C | LYS225 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:O35423 |
Chain | Residue | Details |
A | LYS234 | |
A | LYS312 | |
C | LYS234 | |
C | LYS312 |