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4KTR

Crystal structure of 2-O-alpha-glucosylglycerol phosphorylase in complex with isofagomine and glycerol

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
A0005975biological_processcarbohydrate metabolic process
A0016757molecular_functionglycosyltransferase activity
A0030246molecular_functioncarbohydrate binding
A0046872molecular_functionmetal ion binding
B0003824molecular_functioncatalytic activity
B0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
B0005975biological_processcarbohydrate metabolic process
B0016757molecular_functionglycosyltransferase activity
B0030246molecular_functioncarbohydrate binding
B0046872molecular_functionmetal ion binding
C0003824molecular_functioncatalytic activity
C0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
C0005975biological_processcarbohydrate metabolic process
C0016757molecular_functionglycosyltransferase activity
C0030246molecular_functioncarbohydrate binding
C0046872molecular_functionmetal ion binding
D0003824molecular_functioncatalytic activity
D0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
D0005975biological_processcarbohydrate metabolic process
D0016757molecular_functionglycosyltransferase activity
D0030246molecular_functioncarbohydrate binding
D0046872molecular_functionmetal ion binding
E0003824molecular_functioncatalytic activity
E0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
E0005975biological_processcarbohydrate metabolic process
E0016757molecular_functionglycosyltransferase activity
E0030246molecular_functioncarbohydrate binding
E0046872molecular_functionmetal ion binding
F0003824molecular_functioncatalytic activity
F0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
F0005975biological_processcarbohydrate metabolic process
F0016757molecular_functionglycosyltransferase activity
F0030246molecular_functioncarbohydrate binding
F0046872molecular_functionmetal ion binding
G0003824molecular_functioncatalytic activity
G0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
G0005975biological_processcarbohydrate metabolic process
G0016757molecular_functionglycosyltransferase activity
G0030246molecular_functioncarbohydrate binding
G0046872molecular_functionmetal ion binding
H0003824molecular_functioncatalytic activity
H0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
H0005975biological_processcarbohydrate metabolic process
H0016757molecular_functionglycosyltransferase activity
H0030246molecular_functioncarbohydrate binding
H0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE IFM A 801
ChainResidue
ATYR327
AHOH962
APHE332
ATRP333
AASP334
AGLN475
AGLN588
ALEU624
AHOH917
AHOH931

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE A 802
ChainResidue
ALYS65
AGLY68
ALYS69
AARG371
AGLU389
ACYS391

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 803
ChainResidue
AARG320
ASER623
AASN658
AILE667
AHIS671
AHOH962
AHOH1049

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 804
ChainResidue
APRO310
ALYS313
ALEU315
AASN353
AILE354

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 805
ChainResidue
ALYS605
AGLU608
AGLU612
FASP209

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE P6G A 806
ChainResidue
AGLU336
AMET340
APRO341
ATYR422
AVAL596
APRO599
AILE631
AGLN635
AGLN680
AASN684
ALEU689

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 807
ChainResidue
AASP152
CGLU640
CASP704

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 808
ChainResidue
ATRP14
ASER107
AARG274
AASP278

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 809
ChainResidue
ATYR163
AASP164
AASP219

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 810
ChainResidue
ATRP70
AASN169
AALA326
ATYR327
AGLN328
APHE395
APHE666
AHOH929
AHOH939

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 811
ChainResidue
ATHR555
AILE557
ALYS561
AHOH1073
FASP158
FTYR215

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PGE A 812
ChainResidue
ALEU81
ALEU83
AASP158
AILE161
ATYR215
AASN217
AGLY220
ASER221

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 813
ChainResidue
AGLU615
AHOH938
AHOH1081
FASP154
FHOH1078
FHOH1147

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PG4 B 801
ChainResidue
BLYS65
BGLY68
BLYS69
BARG371
BGLU389
BCYS391
BHOH976
BHOH1130

site_idBC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 7PE B 802
ChainResidue
BASN684
BHOH1039
BHOH1106
BGLU336
BMET340
BLEU344
BTYR422
BVAL596
BPRO599
BARG604
BGLN635
BGLN680

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 803
ChainResidue
BPRO310
BLYS313
BLEU315
BILE354

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 804
ChainResidue
BTRP70
BASN169
BALA326
BTYR327
BGLN328
BPHE395
BPHE666
BHOH980
BHOH989

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL B 805
ChainResidue
BASN347
BHOH1032

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 806
ChainResidue
BHIS488
BMET491
BPHE492
BHOH1068

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 807
ChainResidue
BASN479
BLEU553
BVAL581

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 808
ChainResidue
BALA319
BTYR327
BPHE332
BTRP333
BASP334
BHOH1137

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 809
ChainResidue
BGLU615
BHOH1107
BHOH1202
DASP154
DHOH1055
DHOH1166

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE C 801
ChainResidue
CLYS65
CLYS69
CARG371
CGLU389
CCYS391

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 802
ChainResidue
CARG366
CGLU375
CGLY376
CGLU447
CARG450
CHOH989

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 803
ChainResidue
AASP158
ATYR215
CTHR555
CILE557
CLYS561

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 804
ChainResidue
CPHE332
CTRP333
CASP334
CHOH1028
CHOH1100
CHOH1152

site_idCC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PE4 C 805
ChainResidue
CGLU336
CLEU344
CTYR345
CTYR422
CVAL596
CPRO599
CGLN635
CGLN680
CASN684
CVAL691
CHOH1150

site_idDC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 806
ChainResidue
CGLY175
CLYS190

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE C 807
ChainResidue
BGLU721
BASP723
BARG756
CGLU721
CARG756

site_idDC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL C 808
ChainResidue
CTRP70
CASN169
CALA326
CTYR327
CGLN328
CPHE395
CTHR665
CPHE666
CHOH997
CHOH1008

site_idDC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 809
ChainResidue
CPRO310
CLYS313
CLEU315
CILE350
CASN353
CILE354
CHOH1169

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA C 810
ChainResidue
AASP154
AHOH979
AHOH1076
CGLU615
CHOH973
CHOH1148

site_idDC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE IFM D 801
ChainResidue
DALA319
DPHE332
DTRP333
DASP334
DGLN475
DGLN588
DLEU624
DGOL802
DHOH1015
DHOH1243

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 802
ChainResidue
DTYR327
DTRP381
DPHE396
DGLN475
DIFM801
DHOH986
DHOH1185

site_idDC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PG4 D 803
ChainResidue
DLYS65
DGLY68
DLYS69
DARG371
DGLU389
DCYS391
DPRO392

site_idDC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 804
ChainResidue
DARG366
DGLU375
DGLY376
DGLU447
DARG450
DHOH1069

site_idEC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL D 805
ChainResidue
BASP704
DASP152
DALA231

site_idEC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 806
ChainResidue
DPRO182
DGLU212
DHOH1192
DHOH1202

site_idEC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 807
ChainResidue
DASP539
DHIS541
DILE543
DTYR551
DHOH1216
HGOL806

site_idEC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 7PE D 808
ChainResidue
DGLU336
DMET340
DPRO341
DLEU344
DTYR422
DVAL596
DPRO599
DGLN635
DGLN680
DASN684
DLEU689

site_idEC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 809
ChainResidue
CLYS459
DTYR374
DHIS455
DVAL457
DMET468
DHOH1009
DHOH1052

site_idEC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 810
ChainResidue
DTRP70
DASN169
DALA326
DTYR327
DGLN328
DPHE395
DPHE666
DHOH958
DHOH976

site_idEC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL D 811
ChainResidue
DARG366
DARG367

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 812
ChainResidue
DPRO310
DLYS313
DLEU315
DILE350
DILE354
DHOH1114

site_idEC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA D 813
ChainResidue
DGLU213
DASP214
DHOH1176
DHOH1232
DHOH1247
DHOH1248

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA D 814
ChainResidue
DGLU615
DHOH1047
DHOH1067
DHOH1118
HASP154

site_idFC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IFM E 801
ChainResidue
ETYR327
EPHE332
ETRP333
EASP334
EGLN475
EGLN588
EHOH1038

site_idFC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE E 802
ChainResidue
ELYS65
EGLY68
EARG371
ECYS391
EHOH1006

site_idFC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE P6G E 803
ChainResidue
EGLU336
EPRO341
ETYR422
EVAL596
EPRO599
EILE631
EGLN635
EGLN680
EASN684
ELEU689

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 804
ChainResidue
EARG366
EGLU375
EGLY376
EGLU447
EARG450
EILE516
EHOH950

site_idFC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 805
ChainResidue
EASP398
ETYR572
EPRO576
EASN577
EGLY578
FARG403
FHOH958

site_idFC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL E 806
ChainResidue
ETRP70
EASN169
EALA326
ETYR327
EGLN328
EPHE395
EPHE666
EHOH963
EHOH969

site_idFC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL E 807
ChainResidue
EPRO310
ELYS313
ELEU315
EGLN335
EASN353
EILE354

site_idFC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA E 808
ChainResidue
BASP154
BHOH1203
EGLU615
EHOH1002
EHOH1070
EHOH1082

site_idGC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE IFM F 801
ChainResidue
FTYR327
FPHE332
FTRP333
FASP334
FGLN475
FGLN588
FLEU624
FGOL802
FHOH961
FHOH1082

site_idGC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 802
ChainResidue
FTYR327
FTRP381
FPHE396
FPHE409
FGLN475
FIFM801

site_idGC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PG4 F 803
ChainResidue
FLYS65
FGLY68
FLYS69
FARG371
FGLU389
FCYS391
FPRO392
FASP393

site_idGC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 804
ChainResidue
FPRO310
FLYS313
FLEU315
FASN353
FILE354
FHOH1033

site_idGC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL F 805
ChainResidue
FGLU213
FASP214
FHOH1046

site_idGC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PGE F 806
ChainResidue
FGLU336
FMET340
FPRO341
FLEU344
FTYR422
FVAL596
FGLN680
FASN684
FHOH1003

site_idGC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE IFM G 801
ChainResidue
GALA319
GTYR327
GPHE332
GTRP333
GASP334
GGLN475
GGLN588
GGOL802
GHOH1096

site_idGC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL G 802
ChainResidue
GTYR327
GTRP381
GPHE395
GPHE396
GGLN475
GIFM801
GHOH964

site_idGC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL G 803
ChainResidue
CASP209
CALA210
GLYS605
GGLU608
GGLU612

site_idHC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL G 804
ChainResidue
GTYR374
GHIS455
GMET468
HLYS459

site_idHC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE G 805
ChainResidue
GLYS65
GGLY68
GGLU389
GCYS391

site_idHC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA G 806
ChainResidue
CASP154
CHOH1186
GGLU615
GHOH995
GHOH1097

site_idHC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE IFM H 801
ChainResidue
HALA319
HPHE332
HTRP333
HASP334
HGLN475
HGLN588
HLEU624
HGOL802
HHOH932
HHOH985

site_idHC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL H 802
ChainResidue
HTYR327
HTRP381
HPHE395
HPHE396
HPHE409
HGLN475
HLYS587
HIFM801
HHOH958
HHOH1094

site_idHC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PG4 H 803
ChainResidue
HLYS65
HGLY68
HLYS69
HARG371
HGLU389
HCYS391
HASP393

site_idHC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL H 804
ChainResidue
HTRP70
HASN169
HALA326
HTYR327
HGLN328
HPHE666
HHOH986
HHOH1032

site_idHC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL H 805
ChainResidue
HPRO310
HLYS313
HSER314
HLEU315
HILE350
HASN353
HILE354
HHOH983

site_idHC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL H 806
ChainResidue
DGOL807
HGLU213
HASP214
HHOH1098

site_idIC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL H 807
ChainResidue
HASP164
HASP219

site_idIC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PE5 H 808
ChainResidue
HGLU336
HPRO341
HLEU344
HTYR345
HTYR422
HLYS426
HVAL596
HLEU597
HPRO599
HILE631
HGLN635
HASN684
HLEU689
HVAL691

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton donor => ECO:0000305|PubMed:24828502
ChainResidueDetails
AGLN475
BGLN475
CGLN475
DGLN475
EGLN475
FGLN475
GGLN475
HGLN475

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24828502, ECO:0007744|PDB:4KTR
ChainResidueDetails
ATYR327
BTYR327
CTYR327
DTYR327
ETYR327
FTYR327
GTYR327
HTYR327

site_idSWS_FT_FI3
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:24828502, ECO:0007744|PDB:4KTP
ChainResidueDetails
ATRP333
ELYS587
FTRP333
FLYS587
GTRP333
GLYS587
HTRP333
HLYS587
ALYS587
BTRP333
BLYS587
CTRP333
CLYS587
DTRP333
DLYS587
ETRP333

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PDB entries from 2024-07-17

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