4KTR

Crystal structure of 2-O-alpha-glucosylglycerol phosphorylase in complex with isofagomine and glycerol

Summary for 4KTR

• Entry DOI: 10.2210/pdb4ktr/pdb
• Related: 4KTP
• Descriptor: Glycoside hydrolase family 65 central catalytic, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ... (12 entities in total)
• Functional Keywords: (alpha/alpha)6 barrel, phosphorylase, transferase
• Biological source: Bacillus selenitireducens
• Total number of polymer chains: 8
• Total formula weight: 708730.88

Authors

Touhara, K.K.,Nihira, T.,Kitaoka, M.,Nakai, H.,Fushinobu, S. (deposition date: 2013-05-21, release date: 2014-05-21, Last modification date: 2024-03-20)

Primary citation

Touhara, K.K.,Nihira, T.,Kitaoka, M.,Nakai, H.,Fushinobu, S.
Structural basis for reversible phosphorolysis and hydrolysis reactions of 2-O-alpha-glucosylglycerol phosphorylase
J.Biol.Chem., 289:18067-18075, 2014

PubMed Abstract: 2-O-α-Glucosylglycerol phosphorylase (GGP) from Bacillus selenitireducens catalyzes both the reversible phosphorolysis of 2-O-α-glucosylglycerol (GG) and the hydrolysis of β-d-glucose 1-phosphate (βGlc1P). GGP belongs to the glycoside hydrolase (GH) family 65 and can efficiently and specifically produce GG. However, its structural basis has remained unclear. In this study, the crystal structures of GGP complexed with glucose and the glucose analog isofagomine and glycerol were determined. Subsite -1 of GGP is similar to those of other GH65 enzymes, maltose phosphorylase and kojibiose phosphorylase, whereas subsite +1 is largely different and is well designed for GG recognition. An automated docking analysis was performed to complement these crystal structures, βGlc1P being docked at an appropriate position. To investigate the importance of residues at subsite +1 in the bifunctionality of GGP, we constructed mutants at these residues. Y327F and K587A did not show detectable activities for either reverse phosphorolysis or βGlc1P hydrolysis. Y572F also showed significantly reduced activities for both of these reactions. In contrast, W381F showed significantly reduced reverse phosphorolytic activity but retained βGlc1P hydrolysis. The mode of substrate recognition and the reaction mechanisms of GGP were proposed based on these analyses. Specifically, an extensive hydrogen bond network formed by Tyr-327, Tyr-572, Lys-587, and water molecules contributes to fixing the acceptor molecule in both reverse phosphorolysis (glycerol) and βGlc1P hydrolysis (water) for a glycosyl transfer reaction. This study will contribute to the development of a large scale production system of GG by facilitating the rational engineering of GGP.

PubMed: 24828502
DOI: 10.1074/jbc.M114.573212

Experimental method

X-RAY DIFFRACTION (2.3 Å)