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4KAZ

Crystal structure of RNase T in complex with a Y structured DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000175molecular_function3'-5'-RNA exonuclease activity
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004527molecular_functionexonuclease activity
A0004540molecular_functionRNA nuclease activity
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006259biological_processDNA metabolic process
A0006396biological_processRNA processing
A0006974biological_processDNA damage response
A0008033biological_processtRNA processing
A0008310molecular_functionsingle-stranded DNA 3'-5' DNA exonuclease activity
A0008408molecular_function3'-5' exonuclease activity
A0016896molecular_functionRNA exonuclease activity, producing 5'-phosphomonoesters
A0031125biological_processrRNA 3'-end processing
A0034644biological_processcellular response to UV
A0042780biological_processtRNA 3'-end processing
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0043628biological_processregulatory ncRNA 3'-end processing
A0045004biological_processDNA replication proofreading
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 301
ChainResidue
AGLU25
AHIS181
AASP186
AHOH429
BDC20

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 101
ChainResidue
BDC19
BDC20
AASP23
AHOH409
AHOH410
AHOH419

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00157, ECO:0000269|PubMed:21317904, ECO:0000269|PubMed:22718982
ChainResidueDetails
AHIS181

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP23
AGLU25
AHIS181
AASP186

site_idSWS_FT_FI3
Number of Residues5
DetailsSITE: Important for substrate binding and specificity
ChainResidueDetails
APHE29
AGLU73
APHE77
APHE124
APHE146

227111

PDB entries from 2024-11-06

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