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4K4G

Ternary crystal structures of human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP.

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
E0003677molecular_functionDNA binding
E0003887molecular_functionDNA-directed DNA polymerase activity
E0006281biological_processDNA repair
E0016779molecular_functionnucleotidyltransferase activity
E0034061molecular_functionDNA polymerase activity
I0003677molecular_functionDNA binding
I0003887molecular_functionDNA-directed DNA polymerase activity
I0006281biological_processDNA repair
I0016779molecular_functionnucleotidyltransferase activity
I0034061molecular_functionDNA polymerase activity
M0003677molecular_functionDNA binding
M0003887molecular_functionDNA-directed DNA polymerase activity
M0006281biological_processDNA repair
M0016779molecular_functionnucleotidyltransferase activity
M0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE 1S0 A 601
ChainResidue
AARG386
APHE506
AGLY508
AALA510
AASN513
ACA602
ACA603
AHOH703
AHOH707
AHOH720
AHOH723
AGLY416
AHOH738
AHOH773
AHOH786
BDG5
CDC6
CHOH102
ASER417
AARG420
ACYS425
AGLY426
AASP427
AASP429
ATYR505

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 602
ChainResidue
AASP427
AASP429
A1S0601
AHOH703

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 603
ChainResidue
AASP427
AASP429
AASP490
A1S0601
AHOH707
CDC6

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 604
ChainResidue
ASER339
AILE341
AALA344
AHOH812
CDA5
CHOH101

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 605
ChainResidue
ACYS300
AILE302
AILE305
DDC3

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 606
ChainResidue
ASER463
AHOH797
BHOH203
BHOH210
BHOH214
MHOH771

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA B 101
ChainResidue
BHOH218
BHOH219

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 102
ChainResidue
BDG2
BDG3
NDC1

site_idAC9
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 1S0 E 601
ChainResidue
EARG386
EGLY416
ESER417
EARG420
EGLY426
EASP427
EASP429
ETYR505
EPHE506
EGLY508
EALA510
EASN513
ECA602
ECA603
ECA605
EHOH701
EHOH736
EHOH742
EHOH745
FDG5
GDC6

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA E 602
ChainResidue
EASP427
EASP429
E1S0601
EHOH701

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA E 603
ChainResidue
EASP427
EASP429
EASP490
E1S0601
EHOH745
GDC6

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA E 604
ChainResidue
ESER463
EGLN470
ELYS472
FDC9

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA E 605
ChainResidue
EALA510
E1S0601
EHOH742

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA E 606
ChainResidue
GHOH102
ESER339
EILE341
EALA344
EHOH729
GDA5

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA F 101
ChainResidue
FHOH203
FHOH205

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT F 102
ChainResidue
FDG2
HDG4

site_idBC8
Number of Residues19
DetailsBINDING SITE FOR RESIDUE 1S0 I 601
ChainResidue
IARG386
ISER417
IARG420
IGLY426
IASP427
IASP429
ITYR505
IPHE506
ISER509
IALA510
IASN513
IARG514
IARG517
ICA603
IHOH720
IHOH741
IHOH750
JDG5
KDC6

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA I 602
ChainResidue
IASP427
IASP429
IASP490
ICA603
IHOH719
IHOH736

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA I 603
ChainResidue
IASP427
IASP429
I1S0601
ICA602
IHOH736
IHOH741
IHOH750

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA I 604
ChainResidue
ISER339
IILE341
IALA344
KDA5
KHOH102
KHOH103

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT I 605
ChainResidue
IPRO554
ITHR555
IGLU556

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CA J 101
ChainResidue
JDC4
JDG6

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA J 102
ChainResidue
AHOH701
JHOH202
KHOH101

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA L 101
ChainResidue
IARG308
IHOH766
LDG1

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT M 601
ChainResidue
MGLU466
NDC9

site_idCC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 1S0 M 602
ChainResidue
MARG386
MSER417
MARG420
MGLY426
MASP427
MTYR505
MPHE506
MSER509
MALA510
MASN513
MARG517
MCA603
MHOH731
MHOH791
NDG5
ODC6

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA M 603
ChainResidue
MASP427
MASP429
M1S0602
MHOH791
MHOH798

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA M 604
ChainResidue
MCYS300
MILE302
MILE305
PDC3

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA M 605
ChainResidue
MSER339
MILE341
MALA344
ODA5
OHOH101

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA M 606
ChainResidue
MASP427
MASP429
MASP490
MHOH760
MHOH798

site_idDC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CAC M 607
ChainResidue
MGLU318
MGLU318

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP
ChainResidueDetails
AGLY416-PRO435

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865
ChainResidueDetails
ALYS312
ELYS312
ILYS312
MLYS312

site_idSWS_FT_FI2
Number of Residues16
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
ChainResidueDetails
EARG386
ESER417
EGLY426
EASN513
IARG386
ISER417
IGLY426
IASN513
MARG386
MSER417
MGLY426
MASN513
AARG386
ASER417
AGLY426
AASN513

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AASP427
AASP429
AASP490
EASP427
EASP429
EASP490
IASP427
IASP429
IASP490
MASP427
MASP429
MASP490

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PDB entries from 2024-06-12

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