4JPK
Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain eOD-GT6 in complex with a putative VRC01 germline precursor Fab
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0019031 | cellular_component | viral envelope |
Functional Information from PROSITE/UniProt
| site_id | PS00290 |
| Number of Residues | 7 |
| Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH |
| Chain | Residue | Details |
| H | TYR194-HIS200 | |
| L | TYR194-HIS200 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 10 |
| Details | Region: {"description":"CD4-binding loop","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11188697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14981267","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23539181","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26972002","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9641677","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 3 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11188697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14981267","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26972002","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9641677","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11188697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14981267","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9641677","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21998254","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26972002","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9641677","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"HAMAP-Rule","id":"MF_04083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11188697","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26972002","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9641677","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
