4JPK
Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain eOD-GT6 in complex with a putative VRC01 germline precursor Fab
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0019031 | cellular_component | viral envelope |
Functional Information from PROSITE/UniProt
| site_id | PS00290 |
| Number of Residues | 7 |
| Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH |
| Chain | Residue | Details |
| H | TYR194-HIS200 | |
| L | TYR194-HIS200 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:23539181, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN65 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASP79 | |
| A | ALA98 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ALA92 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083 |
| Chain | Residue | Details |
| A | HIS104 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:21998254, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | LYS135 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | PRO142 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:17301785, ECO:0000269|PubMed:19965434, ECO:0007744|PDB:2NY7, ECO:0007744|PDB:3IDX, ECO:0007744|PDB:3IDY |
| Chain | Residue | Details |
| A | ASP159 |
