4JDS
SETD7 in complex with inhibitor PF-5426 and S-adenosyl-methionine
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005694 | cellular_component | chromosome |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
A | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
A | 0140945 | molecular_function | histone H3K4 monomethyltransferase activity |
B | 0005694 | cellular_component | chromosome |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
B | 0140945 | molecular_function | histone H3K4 monomethyltransferase activity |
C | 0005694 | cellular_component | chromosome |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
C | 0140945 | molecular_function | histone H3K4 monomethyltransferase activity |
D | 0005694 | cellular_component | chromosome |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
D | 0140945 | molecular_function | histone H3K4 monomethyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE SAM A 401 |
Chain | Residue |
A | ALA226 |
A | TYR335 |
A | TRP352 |
A | HOH544 |
A | HOH554 |
A | HOH567 |
A | HOH569 |
A | HOH578 |
A | HOH584 |
A | HOH650 |
A | HOH652 |
A | GLU228 |
A | HOH761 |
A | GLY264 |
A | ASN265 |
A | HIS293 |
A | LYS294 |
A | ALA295 |
A | ASN296 |
A | HIS297 |
site_id | AC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE 1L4 A 402 |
Chain | Residue |
A | TYR245 |
A | HIS252 |
A | VAL255 |
A | ASP256 |
A | GLY264 |
A | THR266 |
A | LEU267 |
A | SER268 |
A | VAL274 |
A | TYR305 |
A | TYR335 |
A | GLY336 |
A | TYR337 |
site_id | AC3 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM B 401 |
Chain | Residue |
B | ALA226 |
B | GLU228 |
B | GLY264 |
B | ASN265 |
B | HIS293 |
B | LYS294 |
B | ALA295 |
B | ASN296 |
B | HIS297 |
B | TYR335 |
B | TRP352 |
B | HOH531 |
B | HOH541 |
B | HOH560 |
B | HOH561 |
B | HOH572 |
B | HOH624 |
B | HOH637 |
B | HOH711 |
B | HOH723 |
B | HOH766 |
site_id | AC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE 1L4 B 402 |
Chain | Residue |
B | TYR245 |
B | HIS252 |
B | VAL255 |
B | ASP256 |
B | ASN263 |
B | GLY264 |
B | THR266 |
B | LEU267 |
B | SER268 |
B | VAL274 |
B | TYR305 |
B | TYR335 |
B | GLY336 |
B | TYR337 |
B | HOH545 |
B | HOH713 |
B | HOH716 |
site_id | AC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE SAM C 401 |
Chain | Residue |
C | ALA226 |
C | GLU228 |
C | GLY264 |
C | ASN265 |
C | HIS293 |
C | LYS294 |
C | ALA295 |
C | ASN296 |
C | HIS297 |
C | TYR335 |
C | TRP352 |
C | HOH539 |
C | HOH554 |
C | HOH558 |
C | HOH587 |
C | HOH629 |
C | HOH639 |
C | HOH700 |
site_id | AC6 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE 1L4 C 402 |
Chain | Residue |
C | TYR305 |
C | TYR335 |
C | GLY336 |
C | TYR337 |
C | HOH583 |
C | HOH614 |
C | TYR245 |
C | HIS252 |
C | VAL255 |
C | ASP256 |
C | ASN263 |
C | GLY264 |
C | THR266 |
C | LEU267 |
C | SER268 |
C | VAL274 |
site_id | AC7 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE SAM D 401 |
Chain | Residue |
D | ALA226 |
D | GLU228 |
D | GLY264 |
D | ASN265 |
D | HIS293 |
D | LYS294 |
D | ALA295 |
D | ASN296 |
D | HIS297 |
D | TYR335 |
D | TRP352 |
D | GLU356 |
D | HOH521 |
site_id | AC8 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE 1L4 D 402 |
Chain | Residue |
D | TYR245 |
D | HIS252 |
D | VAL255 |
D | ASP256 |
D | ASN263 |
D | GLY264 |
D | THR266 |
D | LEU267 |
D | SER268 |
D | TYR305 |
D | TYR335 |
D | GLY336 |
D | TYR337 |
D | HOH579 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:12514135, ECO:0000269|PubMed:12540855 |
Chain | Residue | Details |
A | ALA226 | |
D | ALA226 | |
D | ASN296 | |
D | HIS297 | |
A | ASN296 | |
A | HIS297 | |
B | ALA226 | |
B | ASN296 | |
B | HIS297 | |
C | ALA226 | |
C | ASN296 | |
C | HIS297 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00190, ECO:0000269|PubMed:12514135, ECO:0000269|PubMed:12540855 |
Chain | Residue | Details |
A | GLU356 | |
B | GLU356 | |
C | GLU356 | |
D | GLU356 |
site_id | SWS_FT_FI3 |
Number of Residues | 20 |
Details | SITE: Histone H3K4 binding => ECO:0000269|PubMed:12540855 |
Chain | Residue | Details |
A | TYR245 | |
B | TYR335 | |
C | TYR245 | |
C | ASP256 | |
C | THR266 | |
C | LYS317 | |
C | TYR335 | |
D | TYR245 | |
D | ASP256 | |
D | THR266 | |
D | LYS317 | |
A | ASP256 | |
D | TYR335 | |
A | THR266 | |
A | LYS317 | |
A | TYR335 | |
B | TYR245 | |
B | ASP256 | |
B | THR266 | |
B | LYS317 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 5 |
Details | M-CSA 350 |
Chain | Residue | Details |
A | TYR245 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor |
A | HIS293 | electrostatic stabiliser, hydrogen bond acceptor |
A | HIS297 | electrostatic stabiliser, hydrogen bond acceptor |
A | TYR305 | activator, electrostatic stabiliser, hydrogen bond acceptor |
A | TYR335 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA2 |
Number of Residues | 5 |
Details | M-CSA 350 |
Chain | Residue | Details |
B | TYR245 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor |
B | HIS293 | electrostatic stabiliser, hydrogen bond acceptor |
B | HIS297 | electrostatic stabiliser, hydrogen bond acceptor |
B | TYR305 | activator, electrostatic stabiliser, hydrogen bond acceptor |
B | TYR335 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA3 |
Number of Residues | 5 |
Details | M-CSA 350 |
Chain | Residue | Details |
C | TYR245 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor |
C | HIS293 | electrostatic stabiliser, hydrogen bond acceptor |
C | HIS297 | electrostatic stabiliser, hydrogen bond acceptor |
C | TYR305 | activator, electrostatic stabiliser, hydrogen bond acceptor |
C | TYR335 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
site_id | MCSA4 |
Number of Residues | 5 |
Details | M-CSA 350 |
Chain | Residue | Details |
D | TYR245 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor |
D | HIS293 | electrostatic stabiliser, hydrogen bond acceptor |
D | HIS297 | electrostatic stabiliser, hydrogen bond acceptor |
D | TYR305 | activator, electrostatic stabiliser, hydrogen bond acceptor |
D | TYR335 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |