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4I51

Methyltransferase domain of HUMAN EUCHROMATIC HISTONE METHYLTRANSFERASE 1, mutant Y1211A

Replaces:  4H4H
Functional Information from GO Data
ChainGOidnamespacecontents
A0002039molecular_functionp53 binding
A0005634cellular_componentnucleus
A0008270molecular_functionzinc ion binding
A0016279molecular_functionprotein-lysine N-methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
A0046974molecular_functionhistone H3K9 methyltransferase activity
B0002039molecular_functionp53 binding
B0005634cellular_componentnucleus
B0008270molecular_functionzinc ion binding
B0016279molecular_functionprotein-lysine N-methyltransferase activity
B0042054molecular_functionhistone methyltransferase activity
B0046974molecular_functionhistone H3K9 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE SAH A 3001
ChainResidue
AMET1105
AHIS1170
APHE1215
ALYS1219
APHE1223
ACYS1225
AARG1226
AHOH3151
AHOH3173
AHOH3215
AHOH3314
AGLY1106
CLDH2009
ATRP1107
ASER1141
ATYR1142
AARG1166
APHE1167
AILE1168
AASN1169

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3002
ChainResidue
ACYS1031
ACYS1044
ACYS1074
ACYS1078

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3003
ChainResidue
ACYS1037
ACYS1074
ACYS1080
ACYS1084

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3004
ChainResidue
ACYS1031
ACYS1033
ACYS1037
ACYS1042

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3005
ChainResidue
ACYS1172
ACYS1225
ACYS1227
ACYS1232

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 3006
ChainResidue
AASN1013
AILE1021
AARG1023
BHOH3266

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 3007
ChainResidue
ACYS1033
AILE1034
AASP1035
ASER1039
AASN1041
AHOH3365
BLEU1047
BLEU1070
BPHE1072

site_idAC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE SAH B 3001
ChainResidue
BMET1105
BGLY1106
BTRP1107
BSER1141
BTYR1142
BARG1166
BPHE1167
BASN1169
BHIS1170
BPHE1223
BCYS1225
BARG1226
BHOH3206
DLDH2009

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 3002
ChainResidue
BCYS1031
BCYS1044
BCYS1074
BCYS1078

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 3003
ChainResidue
BCYS1037
BCYS1074
BCYS1080
BCYS1084

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 3004
ChainResidue
BCYS1031
BCYS1033
BCYS1037
BCYS1042

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 3005
ChainResidue
BCYS1172
BCYS1225
BCYS1227
BCYS1232

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 3006
ChainResidue
AARG1023
AHOH3123
BARG1023
BLEU1128
BHOH3155

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues126
DetailsDomain: {"description":"Pre-SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00157","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues117
DetailsDomain: {"description":"SET","evidences":[{"source":"PROSITE-ProRule","id":"PRU00190","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues25
DetailsRegion: {"description":"Interaction with histone H3"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues36
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Histone H3K9me binding","evidences":[{"source":"PubMed","id":"18264113","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20084102","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues3
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine; by HASPIN and VRK1","evidences":[{"source":"PubMed","id":"15681610","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16185088","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31527692","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16457588","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues2
DetailsModified residue: {"description":"5-glutamyl serotonin; alternate","evidences":[{"source":"PubMed","id":"30867594","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine; by PKC","evidences":[{"source":"PubMed","id":"20228790","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues2
DetailsModified residue: {"description":"Symmetric dimethylarginine; by PRMT5; alternate","evidences":[{"source":"UniProtKB","id":"P68433","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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