Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4HKP

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N3-oxide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 301
ChainResidue
ALYS53
APHE118
ALEU119
AASP149
AGOL302
AHOH435
AHOH504

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 302
ChainResidue
AGOL301
AHOH435
ASER146
AARG174

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 303
ChainResidue
ALYS61
APRO86
AGLU275
AARG278
AHOH493

site_idAC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE TKW A 304
ChainResidue
ASER68
AASP70
ALYS92
AHIS94
AASP123
ALYS125
AMET182
ASER183
AILE212
APRO228
AGLN241
ATYR243
AGLY261
AARG262
AHOH413
AHOH414
AHOH415
AHOH462
AHOH468
BASP128
BILE129
BTHR132

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 16B A 305
ChainResidue
ASER68
AASP70
ALYS92
AHIS94
AASP123
ALYS125
AGLU181
AMET182
ASER183
APRO228
AGLN241
ATYR243
AGLY261
AARG262
AHOH413
AHOH414
AHOH415
AHOH502
BASP128
BILE129
BTHR132

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 301
ChainResidue
BLYS53
BALA113
BLYS114
BPHE118
BLEU119
BASP149
BHOH522

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 302
ChainResidue
BLEU232
BALA234
BHOH458
BHOH512

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 303
ChainResidue
BSER37
BGLN59
BTYR285
BLEU286

site_idAC9
Number of Residues22
DetailsBINDING SITE FOR RESIDUE TKW B 304
ChainResidue
AASP128
AILE129
ATHR132
BSER68
BASP70
BLYS92
BHIS94
BLYS125
BMET182
BSER183
BILE212
BPRO228
BGLN231
BGLN241
BTYR243
BGLY261
BARG262
BHOH401
BHOH404
BHOH420
BHOH421
BHOH482

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IFeDrKfaDIGnTV
ChainResidueDetails
AILE120-VAL133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: For OMPdecase activity => ECO:0000269|PubMed:18184586
ChainResidueDetails
AASP123
ALYS125
AASP128
BASP123
BLYS125
BASP128

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCD
ChainResidueDetails
ASER68
AASP128
ATHR132
BSER68
BASP128
BTHR132

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCD, ECO:0007744|PDB:2QCH
ChainResidueDetails
AASP70
ASER183
AGLN241
AGLY261
BASP70
BSER183
BGLN241
BGLY261

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCL
ChainResidueDetails
ALYS92
ALYS125
BLYS92
BLYS125

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER25
BSER25

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon