4FKY
Crystal structure of nucleoside diphosphate kinase B from Trypanosoma brucei bound to GTP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006183 | biological_process | GTP biosynthetic process |
A | 0006228 | biological_process | UTP biosynthetic process |
A | 0006241 | biological_process | CTP biosynthetic process |
A | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
A | 0010608 | biological_process | post-transcriptional regulation of gene expression |
A | 0016301 | molecular_function | kinase activity |
A | 0097014 | cellular_component | ciliary plasm |
B | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005634 | cellular_component | nucleus |
B | 0005737 | cellular_component | cytoplasm |
B | 0006183 | biological_process | GTP biosynthetic process |
B | 0006228 | biological_process | UTP biosynthetic process |
B | 0006241 | biological_process | CTP biosynthetic process |
B | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
B | 0010608 | biological_process | post-transcriptional regulation of gene expression |
B | 0016301 | molecular_function | kinase activity |
B | 0097014 | cellular_component | ciliary plasm |
C | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006183 | biological_process | GTP biosynthetic process |
C | 0006228 | biological_process | UTP biosynthetic process |
C | 0006241 | biological_process | CTP biosynthetic process |
C | 0009142 | biological_process | nucleoside triphosphate biosynthetic process |
C | 0010608 | biological_process | post-transcriptional regulation of gene expression |
C | 0016301 | molecular_function | kinase activity |
C | 0097014 | cellular_component | ciliary plasm |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE GDP A 201 |
Chain | Residue |
A | LYS11 |
A | ASN114 |
A | MG202 |
A | HOH345 |
A | HOH357 |
A | HOH379 |
A | HOH384 |
A | HOH385 |
A | HOH386 |
A | HOH432 |
A | HOH433 |
A | TYR51 |
A | HOH434 |
B | GLU151 |
A | LEU54 |
A | PHE59 |
A | LEU63 |
A | ARG87 |
A | THR93 |
A | ARG104 |
A | VAL111 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 202 |
Chain | Residue |
A | GDP201 |
A | HOH324 |
A | HOH345 |
A | HOH433 |
A | HOH434 |
site_id | AC3 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE GDP B 201 |
Chain | Residue |
B | LYS11 |
B | TYR51 |
B | LEU54 |
B | PHE59 |
B | LEU63 |
B | ARG87 |
B | THR93 |
B | ARG104 |
B | VAL111 |
B | ASN114 |
B | MG202 |
B | HOH335 |
B | HOH346 |
B | HOH355 |
B | HOH362 |
B | HOH399 |
B | HOH401 |
B | HOH402 |
B | HOH403 |
B | HOH420 |
B | HOH445 |
C | GLU151 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 202 |
Chain | Residue |
B | GDP201 |
B | HOH399 |
B | HOH401 |
B | HOH402 |
B | HOH403 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MPD B 203 |
Chain | Residue |
B | GLN49 |
B | HIS50 |
B | GLU128 |
site_id | AC6 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE GDP C 201 |
Chain | Residue |
A | GLU151 |
C | LYS11 |
C | TYR51 |
C | LEU54 |
C | PHE59 |
C | LEU63 |
C | ARG87 |
C | THR93 |
C | VAL111 |
C | ASN114 |
C | MG202 |
C | HOH301 |
C | HOH359 |
C | HOH370 |
C | HOH397 |
C | HOH412 |
C | HOH413 |
C | HOH414 |
C | HOH415 |
C | HOH416 |
C | HOH418 |
C | HOH432 |
C | HOH434 |
C | HOH478 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 202 |
Chain | Residue |
C | GDP201 |
C | HOH412 |
C | HOH413 |
C | HOH414 |
C | HOH415 |
Functional Information from PROSITE/UniProt
site_id | PS00469 |
Number of Residues | 9 |
Details | NDPK Nucleoside diphosphate kinase (NDPK) active site signature. NvcHGSDSV |
Chain | Residue | Details |
A | ASN114-VAL122 |