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4E7I

PFV intasome freeze-trapped prior to 3'-processing, Mn-bound form (UI-Mn)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 402
ChainResidue
DHOH202
AASP128
AASP185
AHOH502
AHOH624
DDA18

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 403
ChainResidue
AASP128
AGLU221
AASN224
AHOH501
DDA17
DDA18

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 404
ChainResidue
AHIS338
ALYS339
AHOH530

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 405
ChainResidue
ATHR158
ALYS159
AALA160
AALA165
AHOH639
AHOH640
AHOH647

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 406
ChainResidue
ASER136
AGLN137
ALYS241

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 407
ChainResidue
AGLN60
ATYR80
APHE278

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 408
ChainResidue
APRO115
AASP116
AHOH634
CDT3

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 409
ChainResidue
ASER162
ATHR163
ASER164

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 410
ChainResidue
AARG114
ATYR303
APRO305
AHOH615
AHOH656
CDC6
CGOL101

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 411
ChainResidue
AGLN186
ATHR191
CDA1

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES A 412
ChainResidue
ATYR141
APRO161
AGLY187
AALA188
AHOH560
AHOH624
AHOH641
AHOH642
DHOH202

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 401
ChainResidue
BASP128
BASP185
BHOH501
BHOH502
BHOH545
CDA19

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 402
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260
BHOH542

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE HEZ B 403
ChainResidue
ASER175
AILE176
BTRP154
BLEU155
BTYR156
BTYR243
BGLN250

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 404
ChainResidue
BTYR263
BGLN267
BGLY271
BASP273

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 101
ChainResidue
AVAL260
ATYR303
ASO4410
AHOH659
CDC6
CDA7
CDT8
CHOH202
DDC11

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL D 101
ChainResidue
DDC16
DDA17
DDA18

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 102
ChainResidue
ATRP81
AMET85
AHOH600
DDT8

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP123
AASP185
BASP123
BASP185

221051

PDB entries from 2024-06-12

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