4E3X
Crystal Structure of Mus musculus 1-pyrroline-5-carboxylate dehydrogenase cryoprotected in proline
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| A | 0004029 | molecular_function | aldehyde dehydrogenase (NAD+) activity |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005759 | cellular_component | mitochondrial matrix |
| A | 0005829 | cellular_component | cytosol |
| A | 0006560 | biological_process | proline metabolic process |
| A | 0010133 | biological_process | proline catabolic process to glutamate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| A | 0042802 | molecular_function | identical protein binding |
| B | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| B | 0004029 | molecular_function | aldehyde dehydrogenase (NAD+) activity |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005759 | cellular_component | mitochondrial matrix |
| B | 0005829 | cellular_component | cytosol |
| B | 0006560 | biological_process | proline metabolic process |
| B | 0010133 | biological_process | proline catabolic process to glutamate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| B | 0042802 | molecular_function | identical protein binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PRO A 601 |
| Chain | Residue |
| A | LEU302 |
| A | ASP303 |
| A | PHE305 |
| A | THR307 |
| B | LYS292 |
| B | ALA525 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PRO A 602 |
| Chain | Residue |
| A | LYS395 |
| A | ALA396 |
| A | ARG399 |
| A | HOH867 |
| A | PHE210 |
| A | ILE392 |
| A | ASP393 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE PRO A 603 |
| Chain | Residue |
| A | SER41 |
| A | GLN42 |
| A | GLY43 |
| A | SER44 |
| A | PRO45 |
| A | GLN184 |
| A | PRO185 |
| A | ILE186 |
| A | HOH758 |
| A | HOH930 |
| A | HOH967 |
| A | HOH1062 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE PRO A 604 |
| Chain | Residue |
| A | CYS348 |
| A | SER349 |
| A | THR511 |
| A | GLY512 |
| A | SER513 |
| A | PHE520 |
| A | HOH855 |
| A | HOH860 |
| A | HOH1127 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE 16P A 605 |
| Chain | Residue |
| A | THR61 |
| A | TRP74 |
| A | TYR80 |
| A | LYS93 |
| A | PGE606 |
| B | THR61 |
| B | LYS90 |
| B | LYS93 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE PGE A 606 |
| Chain | Residue |
| A | 16P605 |
| B | LYS93 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PRO B 601 |
| Chain | Residue |
| A | LYS292 |
| A | ALA525 |
| B | LEU302 |
| B | ASP303 |
| B | PHE305 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PRO B 602 |
| Chain | Residue |
| B | PHE210 |
| B | ILE392 |
| B | ASP393 |
| B | LYS395 |
| B | ALA396 |
| B | ARG399 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE PRO B 603 |
| Chain | Residue |
| B | GLU165 |
| B | PHE212 |
| B | CYS348 |
| B | SER349 |
| B | THR511 |
| B | GLY512 |
| B | SER513 |
| B | PHE520 |
| B | HOH838 |
| B | HOH839 |
Functional Information from PROSITE/UniProt
| site_id | PS00070 |
| Number of Residues | 12 |
| Details | ALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FeYGGQKCSACS |
| Chain | Residue | Details |
| A | PHE341-SER352 |
| site_id | PS00687 |
| Number of Residues | 8 |
| Details | ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. GECGGKNF |
| Chain | Residue | Details |
| A | GLY313-PHE320 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10007, ECO:0000255|PROSITE-ProRule:PRU10008, ECO:0000269|PubMed:22516612 |
| Chain | Residue | Details |
| A | GLU314 | |
| B | GLU314 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | ACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU10007, ECO:0000255|PROSITE-ProRule:PRU10008, ECO:0000269|PubMed:22516612 |
| Chain | Residue | Details |
| A | CYS348 | |
| B | CYS348 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 10 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | SER208 | |
| B | SER513 | |
| A | LYS233 | |
| A | GLY286 | |
| A | GLU447 | |
| A | SER513 | |
| B | SER208 | |
| B | LYS233 | |
| B | GLY286 | |
| B | GLU447 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | SITE: Transition state stabilizer => ECO:0000250 |
| Chain | Residue | Details |
| A | ASN211 | |
| B | ASN211 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | MOD_RES: N6-succinyllysine => ECO:0007744|PubMed:23806337 |
| Chain | Residue | Details |
| A | LYS31 | |
| A | LYS347 | |
| A | LYS395 | |
| B | LYS31 | |
| B | LYS347 | |
| B | LYS395 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P30038 |
| Chain | Residue | Details |
| A | SER44 | |
| B | SER44 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 14 |
| Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:23576753 |
| Chain | Residue | Details |
| A | LYS52 | |
| B | LYS365 | |
| B | LYS376 | |
| B | LYS462 | |
| B | LYS531 | |
| B | LYS552 | |
| A | LYS318 | |
| A | LYS365 | |
| A | LYS376 | |
| A | LYS462 | |
| A | LYS531 | |
| A | LYS552 | |
| B | LYS52 | |
| B | LYS318 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 14 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0007744|PubMed:23806337 |
| Chain | Residue | Details |
| A | LYS93 | |
| B | LYS114 | |
| B | LYS130 | |
| B | LYS175 | |
| B | LYS358 | |
| B | LYS509 | |
| A | LYS99 | |
| A | LYS114 | |
| A | LYS130 | |
| A | LYS175 | |
| A | LYS358 | |
| A | LYS509 | |
| B | LYS93 | |
| B | LYS99 |
