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4DYO

Crystal Structure of Human Aspartyl Aminopeptidase (DNPEP) in complex with Aspartic acid Hydroxamate

Replaces:  3L6S
Functional Information from GO Data
ChainGOidnamespacecontents
A0004177molecular_functionaminopeptidase activity
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006508biological_processproteolysis
A0006518biological_processpeptide metabolic process
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0070006molecular_functionmetalloaminopeptidase activity
A0072562cellular_componentblood microparticle
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AASP264
AGLU302
AHIS440
AZN502
ASD4504

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AZN501
ASD4504
AHIS94
AASP264
AGLU302
AASP346

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 503
ChainResidue
AHOH896
AHOH896
AHOH896
AHOH897
AHOH897
AHOH897

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE SD4 A 504
ChainResidue
AHIS94
AHIS170
AASP264
AGLU301
AGLU302
AASP346
AMET347
AHIS349
ALYS374
ATYR381
AGLY414
ATHR415
AHIS440
AZN501
AZN502
AHOH866
AHOH891

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
ATHR67
AARG68
AASN69
ASER70
AARG428

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 506
ChainResidue
APRO353
AASN354
ATYR355
ALEU356
AASP357
AHOH652

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 507
ChainResidue
AARG105
AASN362
AARG364
AGLN403
AASP404
AHOH783

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 508
ChainResidue
AILE169
AHIS170
AARG173
AHIS440

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 509
ChainResidue
AARG424
AARG424
AARG424
AHOH864
AHOH864
AHOH864

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 510
ChainResidue
AASP357
ALYS358
AARG408
AASP410
AHOH869

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:22720794
ChainResidueDetails
AARG104
AGLY450
AGLY180
AGLN274
AALA311
AGLN312
ALEU356
AHIS359
AASN384
AILE391

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:24275569
ChainResidueDetails
AASP213

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PDB entries from 2024-04-24

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