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4DG1

Crystal structure of HIV-1 reverse transcriptase (RT) with polymorphism mutation K172A and K173A

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003964molecular_functionRNA-directed DNA polymerase activity
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
A0006278biological_processRNA-templated DNA biosynthetic process
B0003964molecular_functionRNA-directed DNA polymerase activity
B0006278biological_processRNA-templated DNA biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 601
ChainResidue
AGLN269
ALYS350
ATHR351
AGOL607
AHOH817

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 602
ChainResidue
AASP443
AGLY444
AGLU478
AASP498

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 603
ChainResidue
APRO226
AGLU233
AHIS235
AHOH812

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 604
ChainResidue
AVAL442
AVAL496
AASP498
AILE542
AGLY543

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 605
ChainResidue
AGLU44
ALYS46
ASER117

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 606
ChainResidue
ALYS103
APRO176
AASP177
AILE178
AVAL179

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 607
ChainResidue
AHIS96
ATRP239
AGLN269
AILE270
AVAL314
AHIS315
ALEU349
ALYS350
ATHR351
AMG601

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 608
ChainResidue
ATYR532
AALA534
ATRP535
BASN255
BGLN258
BLYS259

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 609
ChainResidue
ATHR7
AASP121
AGLU122
AASP123

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 610
ChainResidue
ATHR386
BTHR27

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 611
ChainResidue
ALYS395
AGLU396
AGLU399
AHOH747
AHOH809

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 612
ChainResidue
AGLN197
ALYS201

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 613
ChainResidue
ALYS101
ALYS103
AVAL106
ATYR188
AHIS235

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 614
ChainResidue
AGLU370
AGLN373
ALYS374
ATHR377
BGLU396
BTHR400

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 615
ChainResidue
ATHR377
BPRO25
BTHR400
BEDO504

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 501
ChainResidue
BGLN23
BASN57
BTHR58
BTHR131

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 502
ChainResidue
ATRP406
BGLN330
BLYS331
BPRO392
BVAL423

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 503
ChainResidue
BPRO157
BTYR183
BMET184
BHOH604

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 504
ChainResidue
AEDO615
BTRP24
BGLU399
BTRP402
BHOH646
BHOH704

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 505
ChainResidue
BARG358
BLYS366
BGLU370
BTYR405
BGLN407

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 506
ChainResidue
BTRP406
BLYS30
BLYS64
BTRP71
BTHR403
BGLU404

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 507
ChainResidue
AHIS315
APHE346
ALYS347
AASN348
BTYR318

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 508
ChainResidue
AGLU6
ATHR7
BGLU53

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 509
ChainResidue
BGLY45
BPRO119
BARG125
BASN147
BHOH707

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues190
DetailsDomain: {"description":"Reverse transcriptase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00405","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsRegion: {"description":"RT 'primer grip'"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues32
DetailsMotif: {"description":"Tryptophan repeat motif"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsSite: {"description":"Essential for RT p66/p51 heterodimerization"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsSite: {"description":"Cleavage; by viral protease; partial"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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