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4DFK

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(N-(10-hydroxydecanoyl)-aminopentinyl)-2-dUTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE 0L5 A 901
ChainResidue
AARG573
AARG659
AARG660
AALA661
ALYS663
ATHR664
APHE667
AASP785
AMG902
AMG903
AEDO906
AARG587
AHOH1002
AHOH1010
AHOH1106
AHOH1161
AHOH1205
AHOH1253
BDOC112
CDA204
CDG205
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AASP610
ATYR611
AASP785
A0L5901
AMG903

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
AASP610
AASP785
A0L5901
AMG902
AHOH1160
AHOH1161

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 904
ChainResidue
AARG313
ATRP318
AHOH1129

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 905
ChainResidue
AHIS621
AHOH1201

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 906
ChainResidue
AARG573
AGLU615
AGLN754
AALA757
AALA758
AHIS784
A0L5901
AHOH1159

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 907
ChainResidue
APRO579
AASN580
AASN583
CDC209

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 908
ChainResidue
AASN485
ATYR535

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 909
ChainResidue
AHOH1058
AHOH1246
BHOH308
CFMT302
CHOH441

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 910
ChainResidue
AARG593
AASP826
AEDO911
AHOH1069

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 911
ChainResidue
AASP452
AARG596
AFMT910
AHOH1061

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 912
ChainResidue
ALEU352
ALYS354
AASP355
AHOH1283

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BHOH301
BHOH302
BHOH303
BHOH304
BHOH305
CHOH404

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 301
ChainResidue
AHOH1001
CDG205
CHOH401
CHOH402
CHOH403

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT C 302
ChainResidue
AASN485
ASER486
AARG487
AMG909
AHOH1157
BHOH308
CDG211
CDT212
CHOH442

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-07-24

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