Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4DFK

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(N-(10-hydroxydecanoyl)-aminopentinyl)-2-dUTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2011-06-09
DetectorPSI PILATUS 6M
Wavelength(s)0.999900
Spacegroup nameP 31 2 1
Unit cell lengths108.211, 108.211, 90.115
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.857 - 1.647
R-factor0.1715
Rwork0.170
R-free0.19460
Structure solution methodDifference Fourier Techniques
Starting model (for MR)3m8s
RMSD bond length0.009
RMSD bond angle1.135
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX (1.7.3_928)
Refinement softwarePHENIX ((phenix.refine: 1.7.3_928))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.8571.750
High resolution limit [Å]1.6471.650
Number of reflections73659
<I/σ(I)>16.141.65
Completeness [%]99.898.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829118% PEG 8000, 200mM Mg-Formate, 100 mMTris pH 8.0 , VAPOR DIFFUSION, HANGING DROP, temperature 291K

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon