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4CMQ

Crystal structure of Mn-bound S.pyogenes Cas9

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004520molecular_functionDNA endonuclease activity
A0004527molecular_functionexonuclease activity
A0008408molecular_function3'-5' exonuclease activity
A0043571biological_processmaintenance of CRISPR repeat elements
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004520molecular_functionDNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0043571biological_processmaintenance of CRISPR repeat elements
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN A 2364
ChainResidue
AASP10
AGLU766
AHIS983

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN A 2365
ChainResidue
AASP10
AGLU762
AGLU766

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN A 2366
ChainResidue
AHIS511
AGLU516

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN A 2367
ChainResidue
AHIS1241

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN A 2368
ChainResidue
AARG653
AHIS1297
AASP1328

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN A 2369
ChainResidue
AHIS1311

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN A 2370
ChainResidue
AHIS799
AGLU827

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN B 2364
ChainResidue
BASP10
BGLU766
BHIS983

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN B 2365
ChainResidue
BASP10
BGLU762
BGLU766

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN B 2366
ChainResidue
BLEU380
BTHR386

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN B 2367
ChainResidue
BHIS511
BGLU516

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN B 2368
ChainResidue
BHIS754

site_idBC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN B 2369
ChainResidue
BHIS1311

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 2370
ChainResidue
BARG71
BARG74
BARG75
BARG78
BARG165

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 2371
ChainResidue
AARG74
AARG75
AARG78
AARG165

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 2371
ChainResidue
BTYR325
BHIS328
BHIS329
BARG403

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 2372
ChainResidue
ATYR325
AHIS328
AHIS329
AARG403

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 2372
ChainResidue
BGLY1209
BLYS1211
BASN1224
BGLU1225

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 2373
ChainResidue
AGLY1209
ALYS1211
AASN1224
AARG1279

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
AASP10
BASP10

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
AHIS840
BHIS840

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:24505130
ChainResidueDetails
AASP10
BHIS983
BHIS1297
BASP1328
AGLU762
AGLU766
AHIS983
AHIS1297
AASP1328
BASP10
BGLU762
BGLU766

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PDB entries from 2024-07-17

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