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4CDN

Crystal structure of M. mazei photolyase with its in vivo reconstituted 8-HDF antenna chromophore

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006281biological_processDNA repair
A0016829molecular_functionlyase activity
B0000166molecular_functionnucleotide binding
B0003677molecular_functionDNA binding
B0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
B0006281biological_processDNA repair
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD A 998
ChainResidue
ATYR252
AILE302
ATRP305
ALYS306
ALYS372
AGLY375
AARG378
AMET379
AALA382
AASN403
AASP409
ALEU264
AGLY410
AASN414
AGLY415
ASER422
AGOL1464
AHOH2251
AHOH2262
AHOH2322
AHOH2323
AHOH2341
ASER265
AHOH2372
AHOH2373
AASN266
ALEU267
ASER268
ALEU271
APHE298
AGLU301

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE FO1 A 999
ChainResidue
ASER26
AARG27
APHE55
ACYS56
ALEU57
ATHR58
APHE61
AMET72
ASER118
ALYS123
AHIS272
APHE273
AARG411
AHOH2040
AHOH2041
AHOH2042
AHOH2139

site_idAC3
Number of Residues29
DetailsBINDING SITE FOR RESIDUE FAD B 998
ChainResidue
BTYR252
BLEU264
BSER265
BASN266
BLEU267
BSER268
BLEU271
BPHE298
BGLU301
BILE302
BTRP305
BLYS306
BLYS372
BGLY375
BARG378
BMET379
BALA382
BASN403
BASP409
BGLY410
BASN414
BGLY415
BSER422
BGOL1464
BHOH2182
BHOH2197
BHOH2261
BHOH2262
BHOH2281

site_idAC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE FO1 B 999
ChainResidue
BSER26
BARG27
BPHE55
BCYS56
BLEU57
BTHR58
BPHE61
BALA64
BMET72
BSER118
BLYS123
BTRP126
BHIS272
BPHE273
BARG411
BHOH2024
BHOH2026
BHOH2027
BHOH2100

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1463
ChainResidue
BLYS372
BHOH2165
BHOH2195
BASN266
BGLU366
BTHR370

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1463
ChainResidue
ALEU264
AASN266
AGLU366
ATHR370
ALYS372
AHOH2214
AHOH2249

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1464
ChainResidue
ATRP305
AMET379
AGLY418
ATRP421
AFAD998
AHOH2261
AHOH2341

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 1464
ChainResidue
BTRP305
BMET379
BGLY418
BTRP421
BFAD998
BHOH2188
BHOH2206
BHOH2281

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1465
ChainResidue
APRO172
AGLU173
AGLU176
AHOH2375
AHOH2376
BGLU70
BLYS74

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1465
ChainResidue
BALA159
BALA160
BHIS161
BARG164
BHOH2134

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1466
ChainResidue
AALA160
AHIS161
AARG164
AHOH2175

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 1466
ChainResidue
ATYR168
AGLU286
BHOH2159

site_idBC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PGE A 1467
ChainResidue
ALYS354
ATHR355
AHIS356
AASN361
APEG1472
AHOH2319
BLYS354
BTHR355
BHIS356
BASN361
BHOH2259

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PEG A 1468
ChainResidue
AASP222
APRO223
ALEU224
AALA352
ATYR406
AHOH2307

site_idBC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PGE A 1469
ChainResidue
ALEU-4
ASER13
AGLY14
AGLN16
APRO137
APHE139
AHOH2377
BPHE322
BGLU323
BASN334
BARG337

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 1470
ChainResidue
AARG341
ASER342
AGLU387
AGLU435
AHOH2298

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG A 1471
ChainResidue
AASP59
AGLY95
AILE122
ATRP126
AHOH2077

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEG A 1472
ChainResidue
AHIS356
APRO358
ATYR445
APGE1467
AHOH2317
BLYS354
BHOH2252

223532

PDB entries from 2024-08-07

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