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4C68

Plasmodium vivax N-myristoyltransferase in complex with a peptidomimetic inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0005737cellular_componentcytoplasm
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
A0018008biological_processN-terminal peptidyl-glycine N-myristoylation
A0046872molecular_functionmetal ion binding
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0005737cellular_componentcytoplasm
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
B0018008biological_processN-terminal peptidyl-glycine N-myristoylation
B0046872molecular_functionmetal ion binding
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0005737cellular_componentcytoplasm
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
C0018008biological_processN-terminal peptidyl-glycine N-myristoylation
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FMT A 997
ChainResidue
ATYR211
AHOH2459
ATYR315
ATYR334
ALEU367
ALEU388
AVAL408
ALEU409
AHOH2284
AHOH2408

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS A 999
ChainResidue
AILE144
AGLU159
ATRP289
AHOH2412

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE EN5 A 1000
ChainResidue
AVAL96
AASP98
AASP99
AASP100
ATHR197
AALA198
ATYR211
AHIS213
ASER215
APHE226
ASER227
ATYR242
AGLY382
AGLY384
AASP385
AGLY386
ALEU388
ANHW1411
ADMS1415
AHOH2167
AHOH2240
AHOH2473

site_idAC4
Number of Residues39
DetailsBINDING SITE FOR RESIDUE NHW A 1411
ChainResidue
ATYR28
ALYS29
APHE30
ATRP31
AASN94
ATYR95
AVAL96
AASN161
APHE162
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ATHR183
ATRP192
AGLN193
AALA194
ATYR196
ATHR197
AALA198
ALEU202
ATYR393
AEN51000
AMG1413
AHOH2001
AHOH2251
AHOH2257
AHOH2474
AHOH2475
AHOH2476
AHOH2477
AHOH2478
AHOH2479

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1412
ChainResidue
ALYS180
ATHR247
ALEU248
AARG358

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1413
ChainResidue
ALEU169
ASER171
ALYS172
AARG173
ALEU174
ANHW1411

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1414
ChainResidue
AARG210
ALYS373
BARG210

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS A 1415
ChainResidue
APHE105
AHIS213
ATYR334
AEN51000
AHOH2397
AHOH2407

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS B 999
ChainResidue
BGLU159
BPHE281
BTRP289
BHOH2396

site_idBC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE EN5 B 1000
ChainResidue
BASP98
BASP100
BPHE105
BASN161
BTHR197
BTYR211
BHIS213
BSER215
BPHE226
BSER227
BTYR242
BGLY382
BGLY384
BASP385
BGLY386
BLEU410
BNHW1411
BDMS1414
BHOH2145
BHOH2153
BHOH2154
BVAL96

site_idBC2
Number of Residues41
DetailsBINDING SITE FOR RESIDUE NHW B 1411
ChainResidue
BTYR28
BLYS29
BPHE30
BTRP31
BASN94
BTYR95
BVAL96
BASN161
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BILE186
BASN187
BTRP192
BGLN193
BTYR196
BTHR197
BLEU202
BTYR393
BEN51000
BMG1413
BHOH2002
BHOH2003
BHOH2229
BHOH2235
BHOH2236
BHOH2444
BHOH2445
BHOH2446
BHOH2447
BHOH2448
BHOH2449

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 1412
ChainResidue
BLYS180
BLEU248
BARG358
BHOH2085

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1413
ChainResidue
BLEU169
BSER171
BLYS172
BARG173
BLEU174
BNHW1411

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS B 1414
ChainResidue
BPHE105
BTYR211
BHIS213
BTYR334
BEN51000
BHOH2267

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS C 999
ChainResidue
CGLU159
CPHE281
CTRP289
CHOH2309

site_idBC7
Number of Residues37
DetailsBINDING SITE FOR RESIDUE NHW C 1411
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CASN94
CTYR95
CVAL96
CASN161
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CTRP192
CGLN193
CALA194
CTHR197
CLEU202
CTYR393
CMG1415
CHOH2001
CHOH2171
CHOH2177
CHOH2352
CHOH2353
CHOH2354
CHOH2355
CHOH2356
CHOH2357

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL C 1412
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358
CHOH2234

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL C 1413
ChainResidue
CGLN350
CHOH2320

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL C 1414
ChainResidue
CHIS213
CARG214
CSER215
CLYS380

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 1415
ChainResidue
CLEU169
CSER171
CLYS172
CARG173
CLEU174
CNHW1411

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
ALYS380-GLY386

225946

PDB entries from 2024-10-09

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